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Mouse element [ mm1345 ]


Position: chr4:24,144,061-24,147,950 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Pou3f2 - Mms22l

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTAGAGAATGGGTGGCAGGGgcaatttaggggtaagaaagaaaaccattcagtcacaaaa
accacctcttgccaaagttggatgctagattgtaacagaagctcaaacacctatatttat
ctataaattcagttaagagctgatttgacaactcattttattaatttaaatgtgatttaa
aagagctgatagcaagtaagtaactatttaaacaaggttttaagctaatcagtatagttt
tcttggcaatgccattctcaataatatcttcacagtgtgctggaatgatgtgtaattaat
taataagcaaagttttgcttgtcccttagcatactgaaaccaagctatagccttgtatta
tcctttcaccaaacacatctttttaccttatcaaataaacatattggactagcagaatac
aaattgatcacattcttctagttaataaagataagtcattgtccccagcctaacaaatag
ccatcagtttgaagtgggggtagaatatccttttgagtacatacaacttttctactttta
gagtgagggggttcttaaaactgcaattatatttgattcattttgtctataggatgctaa
aatataactagaatgtgacaaaattaccaccattaaacttcatccgtcaattcagtaaga
gcatccattctataagaaaatgaaaagcataagagaaaaaaaaaagcacatagctctcat
cttatgtaagctagtgagactaaaccattgtaaaataggacaccagcagatgctgatagc
tttctgtgaaagatgattaagtcagcctctgccaccaagcaagaaaaatcaagaagaatg
aaggttgctaaaattcagggccatattttcctattataaatgtgttgaagactctagagt
ttcctttttccaacattttggaaaatatgtcacgctgtaatccccctgcctctcactgtg
aacgcttacacacagtaacaggacgctgatgccataagagaaaaaaaaaaatcaggattt
ttttttttactcaagttgatgaaaactaagtgttttcactttaatttttattttattttt
ttttagtaatctttcagaatcactaatggtcttatgataataatcacagtgtataatctg
acacaattgctcttagagaaattctcagtacaggactgcggcctctgtgggaggtaagtg
tctgaattatcttaaaccactacctgtcttcagctacaataggaaagccctttaatcaaa
ataatcctttttcaaaagagcaacttttttccttctgcaattcactcatcttaaaagagc
actatagcttctgtgcataacttaattcattcttcaagacaagtacaaaatttgtcactg
acatttagcgccagccgtaggcaatggataaaatgaactagttagcaatttaacctgtaa
aaaaacagagtgggatgaacaattttctgccatcaaagcaaatggctaacatttagcagg
attttatttttatttttcagcccatcccatcctcaagaagaaagaagtcaggctaacatt
ttttcagggtcctaaatcttcctctcagtctattcctttaatggtttcaagtaaatgact
atccagaggataattaggcaccgcgctgtcgcatcgtgtcaggtcacagctggatttagt
cagcattaacctttggggagaattggaatatcagtatcatttaaaattaaagacgtgtaa
gcaggcatttctggagatgttagaaaagtaattgtctgtaaattgtttgaccttgagatt
taattgcatgcacaacacacactcaagcaagagccctatactgtctgcattcttttacct
ccaaacctctctctcactgtactgggcatattagcctacctgtggggttttttttccata
aaatattaaagatttaagccttcaattgaaaattaaaagtttcaagcattgcactggata
gtcaaattttaagcaaataagcttatcactcagaatacgaatttcattgtcaaactttaa
aaacatgcattctacactcatgtttaaaagctgagtttaaatctcggccacacctgtttc
tttctactaacaagtttgcatattttgccttattccccttttccctaatgagacagctta
tgctttcaaagtccctcaagctaggcaaatctctccactgcttccactgttaataatgaa
actttgtaattatacaaatccaaagtggccaatcagctttccaggctgagccttcgggta
cctcttaaattattcatgtgacactcgggcctgcgaactcacttgcttatattagaagcc
taattaatatttaatcatatgtgcagaggccacttagcactgcactatccctgagaaaag
ggtaaatataaatgtacatatgcctcaatgtaaatctcatagtatacaaagggaatgcta
agggactcagcataaccccaggagacactaagcagttttcctgctgtgtatccctcatag
agcatgctgcatgctaggtactgtgtgcgagacttagcaaaaagaaaatcctagtcccta
cccaccagggtgcttgtgaatgctttctttcaaaacaggtaaatattgccttttgaaact
ccagataaagaaagaagaaaaggtggtaagggtccagggtgtctttaacaaatttttaga
atgaatttggctttgggtagcatttatttttcttcttaagtggctgcagtactgtaaaac
agccgtcagaatagctgagtagatttttctgggatttctgtttgcctcctagaggaaggg
ctgccaaaatgagctacacattacctatcttagacttcttacagatgattgctgattggt
ggacttgccctttgttggtctagaaaaataacatatgttctttcaaagactaagaagaga
aaaagccctgcagctgaacgtggtaaaccgtagcctgtaaattggtgaaataggaatcta
agaggaagcattagctagtgcatgagcatggccattctgtgttgggctatattcccatgt
tacatggctttaaatgtatgaccaatggcattttgaagatgcctagctcctgcctttgat
ggcagcttcaatttactggaaagggctccataaccatgccatggtctttaatgtcagtaa
gaacacattcagagtcagtaagaagacagcgtttatatttctttggataattatatttct
gtagcccccaacacacagccaaaggattattctgaaacctttcagcaggtcagtcaagtg
atgtgatgctaaagacatgtttcctgaaggagtaattggcagtgtgatagagccgacatt
caggcacataacgacatgctctgttaaccttaggagactatctcactgaccacgctgtta
ctttcttttcaacataaattagaatgtgcccatatggggtcttgataactcagttaacat
ctttagttggactgatgcttcgatggatctaattaggggccctaatatacttgcttcttc
ttggccagtaaaaacaattcctattagtagattagatgagtatcaggataaaattatgtt
gcctttaccctgagttctttcatataaactcatctaatcttgtgaacttctaatatacta
ctgacaaagattacttcctcctagtttccatgggtttggataaattcatgagctcagaac
aactgtgattgtctacataaaacctgccgaaggtcaagacagtcaacattctagcatgaa
gtagaaagagtgtggatactggtaggtcaaatccactctagtgggtagtgccacacctag
taatgtatttggcaacacaaattagacttgGTGGGTTATTGGGGATGGGA
Primer
(+)TTAGAGAATGGGTGGCAGGG
(+)tcccatccccaataacccac


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