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Mouse element [ mm1342 ]


Position: chr1:12,993,828-12,996,637 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Slco5a1 - Prdm14

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGGTTGTACACTGCGGTTTaagagtgttttgagacagagtcttaggtaggtctagctgg
ccttgaactctgtatgtagcagaagatggctttgaactcctgatcctcctgcttcgatct
cccaaatgctgggattacaggcatctaccatccatgcctggccttttatacagcattcta
atagttaaccctttactctctcatttcactatcttagaaatcatgtttccatagtgagat
tataaatcttagacttgaggtacctacaagttctataagtatgtcagattgagtgaacac
aaaccatatatccctaccaaaaaaaaaaaaaatctgtcaatgaagttctttctgcaggct
actgtttaagctgcttcccacagagtagtcataggcaggaatgctgccttcagcacactt
gagtttactttaattctttaagccctattccacatcaatatatattctatatctcttttc
ttgattgttttgatctgctttcccataacagccctctctcctcgaggcccccctcccaca
ggaagagttgcttcctaaccctccttctccttggattgacctccaaccatccttcatgct
actagaaaattctccctgaagcttttcctactcaccactcttcctaaacctccatacctg
gaaggaagtttgcttgcaccttactttcctctgcaaactctctaactcaggacttagcac
acatggcatggttagacctcaaaagagcaaggtccccaggaaattgtatggggtgagaag
actttaacttgagagggtttgttgggcatgaaaaagaaccagttcagaatgggacaccac
agttcaaagccaggacaactaggaactatctgggaggtcccaggtgagtccaggtgagct
gtaccaaaaagggaggcacatgagaattggagataatagcaagcaaacagaggtggttgt
tggagactgttcttaatctacagtaacagatcctcttgtccaaactcctgcagaatagca
aggagattaaggagcccctgagattttcaactactaggtgttgaacaaggagactttgag
aaaaatagacgctgcagctgcaagaagtataaaatgaaaattcgttttttaatacgtcct
aaaggatcagaatggaggaggaagaaaaaaaaacttctgaaagaaacacaccatatttta
agtgagtcagagagaacaggaaaaacaatgctttgaatttgcccagtgtaagggcaggga
agatgaaagagattaaactgtgcttcattgagcatgcgccattcttgtgagctgcattca
gaagagacgtgagctgggcaaaggctggactggctgcctaactggaccctggggaaatct
cacttaacattcattagcagggaaactccagagcctggggacaggtacactgaacggtga
agtcatgcactgtgttgaacacttttctgtagcaggcagatggtacacgcagctgtgaag
atctgccttggtgaagagagaatggtaagacctcatggtaacgaggaagcaacaaacaaa
aggccatccaacttctcccttggatttgaaaggctttggcctctctagctccagacatta
tacactccgataactgctaggcagctcaaacaaaagagacctgtttttccctctcttcat
ctatgcttactccaatcctctggggcaaaaataggatgctgttgtaatactgctcataac
caggaagggaatgcctcgggcaaacacatcaatggaaaaaacttattcccttcagattag
aaaagccacagtcaccgattaagcagcattaacagaaataaaatgatagctacaaactga
caggcaggcctaatcatatcgacaatattaataaatgaacaatcatagaaacatctcatc
atttgctcttcattttaattaaagagcactgtaagcaaattgaaactcttcactgatttt
tatttaatatgttgatgtgggtgtggagggtgcactgtgagagtgcccacaaacagcttg
tcctaaacatagaggtcagaggataacttcctgtaatctgttgtctccttgcactatgtg
gctcttagggatcagatgcaggtcatcgagcttcacaggaagtgcttttacccacagagt
cacctcgcccctcccccatcttcagtaattggtcaggacaatgatttcggattgccatta
tcatctcctaagtaaaaatgtaaacagtggctaagagtacttgcagctcttccagcggct
ctaagctgaatcgccagaaccaaacagcttacagcaacctatatctacagcttcaggggt
ccaacacctcatctaacttctgcaggtatcagaaactgacacacatacatatgaataaaa
acaaaatgttcttaaaagaaaatataaaatcaaaccaaggcagacattagaaggaaaaca
gtctttaaactttatttattaattatttatttctttttatttcatgtgcattggtgtttt
gcatgcatgtatatctgtgtgaagatgtcagaactactggaacgggagctacaaacagtt
gtgaactgtcatgtgagtgctggaaattgaacctgggtcctctggaagagcaaccagagc
tcataaccactgagctatatctccagcccccaagaaaacaatttttaaatcataagcaag
ggtgggtgggatgacgtatacctgtaacctcagcatgtgagaggcagaggcaagagagtc
tggggttcaaagctaatgtcagttgtatttAGAGCGAGGGGATAGTCTGA
Primer
(+)CTGGTTGTACACTGCGGTTT
(+)tcagactatcccctcgctct


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