Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1339 ]


Position: chr16:37,812,733-37,815,651 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Fstl1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ACCTGCAAAGAGACCGCTTAtataaccagagcctcctccatctctgctgtatgaaaggcc
ctccaggggttgctgggccctttgcattttgcatcctgtcagttcggcactggcgtacct
ttccactgtcaatgagacagggaagaatggggacatgacagtccaaggtgacagtgacat
catttcgcaggggaaactgaaaataaatcaccccctgtagtgacagtcgcttcctgttac
acagcacatggcgcggctcagttaattctcaagacaattctaaccttcaatgttttatgt
ctgcacccaaggaagggggttgcaagagaatactcgtggcagataaagaagggggctggg
tatgagtgctgcatatgggatctaaacgccttacacttgctattgtaacatccatattcc
cattatagtttccctaaccttaatgcatacggatgtaagaatcaaccaaacataaaggaa
tcatttgcctttggttggaggaacatccaactctatcgctttttgttactgggcctctca
agtcagctttcctacctgtaaaagagggataatatgactctggaattaggaacatataga
gcgcttaagtagcaccaaccatagtaggtcactttgagggaagccaggtgtttacaaatg
gattcttagttacccgtgggctgaatagaggtttctctctctctctctctctctctctct
ctctctttttagtttggggaacttaggcaaattatttgaccttttggggcctcaaattgc
tcgtttgtaaaatggagctaataatcatatgcatgctcttctcaggttagccatgcagta
aggtgaaatgctgtgtgtgaaaacattcacgtttttaattgcactcttcaagtactagtt
gttagggtgaaagaaaaaggtgttctcctccaaacataacgtcagtgagctacctgtgca
aatgacttgggttgaattcagattccacataatagtgtttattaggaatatttaccacag
taggagagaagagggggtagctcattgggtaaaaacacttgtagccaggccagagggcca
gaggtcaatctctggaactcacccgatggaaagagaaccccccccacacacacacacaca
cccaaaaagccatcctctgacctccacaaacttgccctgactggtgtgcccctcccacac
accaataactaaacaataaacatgcacatgagacaagatgaggctctgaactcggcagga
tcttctgcaagcagccctgtaaggtgtccccttgatcatgctcgccccctcccccaccca
ccattttctcctgccccacagacgaggagatgtgtagtttaaaggatcagagggactagt
taagtacacactgggaacatttgagtttttccttgaatgcagacatatgccaaagctcac
tgatttgtgcatttgtgtatcttcagctcctgtgataggcccaggggttaaagtgttcag
ctcagggaagttgaagaggccactggaattgtcttttataacaatcagcactgtcttttt
ctattcccttctggctctgctttttgctcggagacacagctcccacaagagggagagccc
tgtctgtctgaagagtttgctcaattttattccccctctctgtttaggaaacaaagatct
aaatccatcctccacccttctgggaattacttcctcttttcttcactgtctgccagcttt
tttgaattctccttagcaacattttaaaaaaaaaaattagtttagcaacagcatttaagc
caatgagatctgagcatgcaaatgagttctagaccaatgagagctctgcatggcaggcaa
gggggcttatgggagacaagaataacctggagtttgcagagcagcctccaagtggcagca
gagcagctattatggacccatcacctctcaagcctctactttgtttccgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctggttcccccg
tttaaaacatttactgttacagtaagccttgtaggtatgagttctttagatacactgtag
gcaagggctggaaatgtggactttgctgttacccaagtcattcgtaggcctcttctgtct
ttgttgttttgtaaccagctccagcccagtcgtctaaggcctggaagccttgggtgattc
agccagcccagcctggcggaacagaggccccgggggaatccctgtctttgtttatccacc
actaccacagagctggggggtgaatgtcgtgggagtaaaggaatgtaccaccaacaaact
ggtcctatcacaatccacatgtggcatacagaccttcctctccctgcagttctgtaacat
ctgtctgaacaggaaacctgaccagcaagaagcttgggggccatactctttttggagtgg
gtttggtcctcttcatcttgtagcctgggtacacacagagagtggctggatatcatagca
tatccacatggtgaccatccttcggtcctttcagatggtattgcagtaaataccttggtg
ttaagatgtctggatgtgtctccagtgtttccatttcttcctagcttagacttctcatcc
ttaaagagacagttaaggtgtggaatcttcagaaagggccatctgattctcccatacacc
cctgctccccagagcacccactgtggcccttccgtatatgtgttcctccctgagagtcac
agagttcatgagatcaaagattgccctgtgtagctctagcccttagcatagtgctggctt
tatcacaaatgctcaaaccgtatttttttttaatgaggaaggatgcaagaaagtcactct
tcacaggggaacaatcttcAGTGCCTGTACCTGAGCCAG
Primer
(+)ACCTGCAAAGAGACCGCTTA
(+)CTGGCTCAGGTACAGGCACT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.