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Mouse element [ mm1327 ]


Position: chr3:121,438,015-121,440,547 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: F3 - Abcd3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGTGACTCCGTTGCTGTAAcaattgaccttatcagtcttagtggcttacaacaatatata
cttttcgcttagactacgtgtttgtgagtgttggtaggtggtagctcctaatggtgtctt
ctcattacaaggcccgaaacaaagcaggggtctctattggatcagagcaaaggtgaacac
acacacacacacatgcacgcgcgcacacacacacacacacacacacacacacacacacac
atacatgcgtacacccccccccccccaaagcacaaccataccaaggcaaacaaaacaaaa
cagcaaaacaggctgctacaccttcctttttttttagtttttcgagacagggtttctctc
tgtatagccctggctgtcctagaactctctctgtagaccaggctggcctcgaactcagaa
gtccgcctgcctctgcctctccagtgctgggattaaaggcgtgtgccaccacgcccggct
acaccttccatgtttaagccactttttaaaaatgactttttgattataattacatcactt
ccccccttccctttcctccctgcagtccctccctcgtaatccctgccctttgacccttag
actcattcgaattcatagtcttaacacttccaccgaatactttggttcaccagtcaagca
agtcacgtgactaagcctgataaacctagcctactgagagagaccatctagtacagactt
agggttctccccagtcactcacttgcattttggaggaggctcaaagaaaaagagacctgc
ctttgattttgttgttgttgttgataaaaattggaaggatcaagttagacctcatgtgag
gaaactaagcacaaggactcggtcatgctgagttgactcagtgacttctaaaacggagaa
acggagcgagtccttcagaggcagcaaaagtctacactgcgcagaaagaagatctgaact
gaatgatggtgttctgagctggctgccaggcaaacctgctcttgcttccctccctctgtg
caaggctggggagttgccagtggccctcttaactggtcggttttgtttactcaataacaa
atgcgctccatctgccccgctgcgggcaccagtgcagcttttgataccacagcgaccagt
gtgtgtggtggagtcccaaagagaaaggacaagcatgtgtccttgtcctcagagaggggc
cttacgccttatcttgagtccctgctcacatgacttatccaggacaaagagctcggtgta
gcacacgaagggcaaagttggctacaggagctcatgactgaccttgccttcctctgccag
gaataattatagcattatgtaatcccctagcttcataatctaaggaatttgaattatctg
cagactgaaagcaggtctggatgtaacaaggtagagcaggaggaagtcgttatagatgcg
gtgtagcggtgctgcgggaatcagaaggttccactcccagcgttaaccattgcacacagg
ccccctctctccttgttgtggacatgagacagctgctcctaaatcaacacaacgggttct
gcagccgaactgctgccctctagtgggccgaactgaacgtctccctccctgtgctggagc
ctatcaagcatactatattaattactaaacagaactcgaaagctctctacagatacattt
tccatcttaaattactgtttggcatatatgtaagagactctttttgaactctgagtcaga
gcaactctctcttaaacaatcatcttgctcccttagggaaaactcatttctgaatgccct
tcctatgagctcctggatttaacacgtactctttaacacattctcttcccccaactgttg
cctcgctgtttctttttttctttattataatcttggctttaatagagtgggatcaatcct
atttaaggagaggctcccgcaaatgaccagtatgcacatttgtttaacatagcaggagcc
ctcacttaatcacacacaaaaggatgctctgactgggtgctgcacacagatgatctgtag
agcaaaatgagaagacaagttggggacgtgacagactcctggaatacacttcacccaaag
cccccaccactggaaacccaactaattattttagcaagctggagctgggttttctgttcc
ctgtgatcaagccttctgtcctttgtagttaaaaagaaatacccaaactaacattgtatt
atgaaagtcaagcataaagaaagaagccagctatggtggtttgaatgagaacggccccca
taggctcatatgttcaagtgcatggttcccagctggtggcattatttgggaaagattggc
catggtgggtgtggccttgttggagtttgttgctgctggtggactttgaggctgaaaagt
ccattccattcctctctctctctctctctctctctctctctctctctctctctctctctc
tctccctccctccccctccccctccccctcccccctccataacagttactctgGCATTAG
GTCCAAGCCCATG
Primer
(+)GGTGACTCCgttgctgtaa
(+)CATGGGCTTGGACCTAATGC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.