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Mouse element [ mm1325 ]


Position: chr2:30,860,459-30,863,597 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Usp20(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGGCATGAAGAACCTGGGAAactcctgttacatgaatgctgccctgcaggccttgtccaa
ttggtaggttgtcatctgagggaagggcaggaactgtccctggcaaaacctagaaagagc
agcagcctccaaccagtgccgtgtacattggtcatagacattccataagatatacctcaa
agcccctaaaacaaggcatgcctggtgactgccgtccctttgagtttcatgtgagtcctc
agatagaggagaaggcatgataggcaggtctactcactggtggagggtttccacagcatg
tgcaaggccctgggtttcacccccaataccgtgtgcatgtaacctatcttcaagaaggga
acttcattgtagcccagtcacgtggagggaatgtaggctgacaggtactgaagtgagcag
gcctgattgagagtgtgtgtgagaccattgtttcatacacacacacacacacacacacac
acacaaacacaactgacacagcaatgataaagcaaacccagcagccctcccccttttcta
tgtatagctgtatgttaacacataggacacacaggaaggagagaaaaagggaacagatat
gaatacctagaaacgtctggaaggatagcccccaaaggttcacagtgactgtctcatagt
aatatagtcagttgatatggtttgccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
ggatatgaatatgtggtttcttgcagtgtgataacttctaaaaatatgcagaaaggggag
tgaaggaggtgccctcctgcagagtggccactgtagggagcagggctgctccaccctgtt
cattcacagtgtcccagcctcaggacctgtggcagaagctcccatctgactcaggagaga
ggggtatttgtttcctatagctgacaaggccttcctgtctcttgattctggaagcccact
ctgtagtagtttcttctcaggcccttctctctgtgtatgcagccatgcattcataaggtc
ttttcctctgtgcacatgtctggtgtccagaattcctctggaaggataccaatgaggctg
gcctgagacctgccccagcatcccatagtaatctgatacctacttaagggtcctgtgtct
taggactttacaatgaatttggggggttttggtgtaggcgagctcctagtcatctgcagg
gagttctgggtatggtggcccgatcttcggtggccgttttcaccttctgttgttaacttt
gctccttaaaaaaaagacattctgtttctttaatgtgagtgtgtgtgtgtgggcatgggt
ggagtcgggggtaaccttaagaactggctgtttccttctaccatttaggccatctctagc
tcctccttaataacaccatgttcttcccatttcttttctgtcctggctttccacctccaa
cccagccccccgctcacccagttcttcctggagtgtggtggtctggtgcgcacagacaag
aagccagccttgtgcaaaagttaccagaagttgatctctgaggtgtggcacaagaagcgg
tgagtctgaccttggttagaagtgtggcaggccttgcctgtcttctcagtggatcgcttc
ctctgggttcttccctggcacatgcgcactcacagcagcctgcactgagcctgcacatgt
gtctagttttatctagttcccttggtgagtggggagacagataaggagcatgaggcgtcc
atcgtgttcccaactgcagagcttgtgacagtggagccagggtctgagctgacagcaagc
ctgggggcagctgttttgacagttgtctctcctgaggcctggaaatcaccatcttgccag
tgtcaggtctcagctgaggctgggggtgggggtggggtagggtgttgggtgcctgccaag
ccagggttgtggcagagtgaagtgaatttaaaggtgaagattgtgctgggtctcctctgg
aagtggaaggtgaagcagttgcgtacacaccctcattacttccctctctctattcctgct
tcatatcctggcccagaccctcaccttgcttgtcctgatcctctggctttcctggccttt
ccctgaaggctcctgttagtcacttttggacctccgttgttgagcctgcctgctttctta
gtccctgactcaggaccaactctacctcttcctcctgtccctcttcccagcaactgcaaa
ggtctacagtactcctgccttgtccttttgctcccaaactgtaacaaaatgggcctcagg
ctttcatgagcaagcagacaaacagcagatgtaaaaatgaaaaagagcagaattgggagc
tcttgaacataagccacaggcacgcactaggttggaagtgaactaagaagctgatagtgt
gctgttccatgggtcagaggtccaagttcctgtgaggtgcctgtgtgcatcttagcctgt
tcttctaggaacaatgctgtggtcctactgtgcagcactcgtgggcggggacatcttgat
gatagatagtatttcattgtacttttgtgaggtttaagtttttcagcaatggacatatat
tgttcataatgagaaaagctatgtatacattttaccgtgaagttaaataaacacactgcc
cctgggacctctgctagctcggacagcattggcgtcttgcttctgggtgtggatgctatg
gacttatctcctggttagtggggcgagtggaggtggtggggacagcccctatggggtctg
atctgccttgccctcttgcctttccaaatggtgtcacttaaggctggccacctaggctag
cagatttggtctccccacaggccaagctatgtggtccccaccagcctgtcccatgggatc
aagttggtcaacccgatgttccgaggctatgcccagcaggtaagctgtctagctgcttga
gacacgggttcagccagagcagaccttacagcaggcagagatgccaggcatctgttgtca
ggccctttttactcacgagaatgtgaggtttcccagtaacctaccggcctttagcaccac
tttacagacaaggaaactgaggcttaaggaaccacatcaacaatgccagccacacagccA
GTGAGCAGTGGAGAGCATT
Primer
(+)AGGCATGAAGAACCTGGGAA
(+)aatgctctccactgctcact


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