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Mouse element [ mm1320 ]


Position: chr7:87,263,180-87,267,149 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Idh2 - Mir1965

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TACAGAGTCAGCACAGGTCCccacatttgcatggccagcccgctacctgttgagtcattt
ccttggccccatattttatttttgtttgtttttcaagacagggtttctctctgtagctca
ctctgtagcctaggctggcctctaactcacagcgatccatctgtctctacctcctgagtg
ctggcattaaaggcatgtaccaccacacccagctagccccacattttaaaagttaaactc
catttcacaattgaatctatgctatatacaagttcttggaggaaggacaaaaattactct
atctccacaatcctatgtacaggtgcagtcgtcacagacccagggacaagaagggaatcc
caagaggagcttcttttattattattactacattttattattgttatttgctgttgtttt
taaataagctcttacatagccaggctggcctcagacttactatgtattggagaatgatct
tgaactcctttttttttttttttttttttttctgagacagggtttctctgtagccctggc
tgtcttggaactcactttgtagaccaggctagcctcgaactcagaaatctgcctgcctct
gcctcccaagtgttgggactaaaggcatacgtcaccaccgcccagctgaccttgaactcc
tgatcctcctgcctccacttcccaagctgagattaccctacttccatgaggagttttgat
ggcgcatgggacactcagcatggagaaggtcctctgagatggaggagcttccctggtaag
tgtgtatgtggatggaagacccgccaagagtgtgacaaagtgggtgtctcaagctctgtc
cagcctacactacatgtgttctgtggtgtgcttgtaagcagactatagagatgtgttggg
aggcaggggttcacacctggaagtgagatcagagtccctggtccaaagactggaccgaca
tgagtcctggaagacttccaaaaaaaggtaggaccacagaggtagtgcagcagctgcctg
aatgcaagccaggcaggagaggagtcagggtgagtcagacctccccctggaaggctgaag
aacgccattattagaaagtggaaaacaggaggcgagtgttgatagctgagggagctattt
atggtgatctccacagcttgtcctgtgcctgtttccagcactttatccttgaagcctggc
tccagcaggcactctgcagctctctatacctgcaggagctccagcatgggcgaatacaag
aacagctggttagccctgttgcctgtgcctgccaggcctcttaccaagtcaaagagctgt
tttcccctgccgaagcttaactcggcttctgccttgtagatgctttgtcctgtgtgcttg
tgcccctacaattcagatgttgtacatttattctcttagtgatggtatttaggggtagta
tcttggggacataattacatcatgagggccatttgtcatgaatgagattttgaccttgta
agaagtttcatgaagcggttgacctctctagtatgaggcccttagcaggcagcaagcaca
gtagcacccgaacctttcattatatgtttaaagatttaactaatttaatttttttttgtt
ctattttatgtatatgtgtgctttgcctgcatgtatgtagacgtactacctgggtaggcc
aaaacaatgcatcaactcctctggaactagagtttcaggtagtgtgaactgccacgtatg
ggtactgggaaccaaagctttgtcctccacaagagcagcaaatactcttacctgctaggc
cacctctccagcacaattattattactactattttaagatagggtttggtatcccaggct
ggcctcaaactggcgctgtagctgaagataggctcaaactcctgatcttcgtgcttctag
ctcttcagtgctgggatgttaactgtgccccaccctcttgctttcagtggctccagggaa
tcaaaccccaaatcttgtgtcagtttaggtttccattgcactgacaggacaacacaacca
aggcaactctactaataaaggacagtatttacttagggctggcttacagttcagaggttc
agtccattatcatcaaggtgggagcttgtagcatgcagacagacatggtgctggagaagg
agcagagagttctatatcttgatctgcaggcaacaaaagggaactgtcttccccaggcag
ccaggaggagggtctcttcttactgaacatagcttgaatataggaggagacctcaacccc
acccccccaccccacctccacccagtgacacactatctttaacaaggctacaccttctcc
aataagggccacaactcctaatagtagcacttcccaagggccaagcatattcaagacacc
acaaacctcacacacgttcagcaagctctctaccaactgggctaccctccagtctctgct
tctgactttgtaaagtggacaacaacggggtttagaagcagatttaagggtgaatttgct
gttactgtctgttttgatgctcttttaagataaggcctctggatgaccactcagtgctgg
gagaagatgctgggatactagtgaatttcatgaactgttctacagcttgcttaaattaat
cttaaacattgctacattcagagagcaagaatcaaacaacgagaaacagttgaaagccat
taacatgggccagatgcaacataatgaggttggcaggagatggccagagcatagtttcta
ccaacttgcagatggaatttgtatccttagggtctcactgccgtgagtcacagcctcttg
caacctcagtctcctagctgcaaatagggactaacagtgctaattgctgggaagttctct
gggggctaaatgagcttccagcacagtgctgaaatgttgtctggcacacagaggcatgtg
ctgccccacacagggttactggacctctgagacttgccaagtatgacgtagggatggaac
agagggcacattccttcctgagaggaccttaatcgtcaggggtgtgggggagacagatat
gtaaacaggtcatttccaaatatactgaacatggtacagagagtgcttggctgctacagc
aaccccagagtaatcccataatatccctccgtcttgaaatgcatggactctggaatccag
ccatttcgcctgcagggtttgatgccaaaagaataatctctaggtataaggagactcgga
atatgagactgctcacagcactgttatctgggataggaaaacccaggtgtggtggcatag
gcctataatctcagtacttggtaaactttaggcaaaggattagtcaaggctagcctagaa
tacataaggagttccaggatcgcctaagctacaaagagaaaggggaaaaaaaaagaaaga
taaagaaagtcaataagaaagctcactggggccgggcgtggtggcacacacctttaatcc
caacacttgggaggcagaggcagtggatttctgagttcgaggccagcctggtctacagag
tgagttccaggacagccagggctactcagagaaaccctgtctcgaaaaacaaaacaaaac
aaaacaaaacaaaacaaaacaaagctcactgggtcatggggcctgcttatcaagccttaa
ccacttgaatttgagccccaagccccacatggtggatgtctttgatagggtttccattgc
tgtgaagagacaccatgaccatggcaactcttcttcttttttttttttttctttttttgg
tttttcgagacagggtttctctgtgtagctctggctgtcctggaactcactttgtagacc
aggctggcctcgaactcaaaaatccgcctgcctctgcctcccaagtgctgggattaaagg
cgtgcaccaccacgcccagctcatggcaactcttctaaaggacaatatttAACTGGGGCT
GGTTTAGAGT
Primer
(+)tacagagtcagcacaggtcc
(+)actctaaaccagccccagtt


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