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Mouse element [ mm1318 ]


Position: chr6:50,304,038-50,307,302 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Osbpl3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCCTATGTCACACAGCAAGGaaaaaaaagagcaagcaacacgaacaacaacaaattcttt
ataatttgggcctgggttcttttttagttttgaaggagcacaaatggctgctttaattaa
ttcccccatcattggctattgaagttattcctactaaatgaaaacaaatttcaaaagtaa
tcaaaggaaaaataataaaaattctgaaattttcttttaaaatacttaaatcattgcttg
atgatgatgatgattggttgattaggacataatacacatggaatgcacacactggaatac
aacttgagtctggatacatacactagatacaatataaaatatctctcacaatgggtaata
tagttttgcatacgtatgatactggagaagatctcttgtttgactctggctttgagtcaa
agctcccacccctgggcagatggcacagctagaggccaactagtggtcgccaggagttag
atcgcatatcgggatcagccccagagcagagggcagggagaggtcctgcagggctctttt
ccatccttcccaaagcccagcgcatcctctctagcaaccttccctacatcagcaactgaa
ttctttgatcaactgccttttatctgagtccttttcactgtgaatggagataaagacaca
gcctagtttttaaaaataaccactgtaggtatctcagaatctggagctgtaaaagggatt
tcttcaatggttgaaagggcgatggtgggtgctattcagtgtttaatttagagaaacttt
ttggcgaggtagcagcactgaatgagattttgttataataaccaccagcagctgtccagc
cgctcaattacgcccagacaataacagggaaactgtctgcttagtgataagcagctcagc
acactgcctgtaaaacaccaaacgatcctgaaacctttcacttcagcttgcaaagccact
gctagaaccgtgctttacccgtttcaatgctgtgactctctaaggccccacagtgacgcc
gctcctccagaggaaagcattccttcaccccctgactccatcactccagtgttaaacctt
tcttccaaggacttccccttgctcgtggtagtgtggatgaggctgagccccttgagagca
cctcccatttcctcctgccttgggaacaggaggctcctgataactaactctagctgtgga
acaaaagctacaggctcatgttcccggaaggctatattgtggcacacattcgaattgtgt
ccagtgtccttaggtcaaatgactgttttcagattacatacaataggcccgcacttgtga
aagatgggtgtgtgtggtaccatcacataagaatcctcggccagtcctatagaaagcact
caagtggatcagccttccgagttgtcctcagactcccaggcaaaaggcaaagcacagagc
actaactctaggacagccgccacgtctgctccgttcctctcagttgcactcagtgcaaat
tccaggagggatgagtcattactccatgcttcccagagtaggggaaacgtagatgtggtc
ttacccatggctgaatgggaaagaagaacagaatttcaaacgtggctttactgactctgg
tgagaaaggaggtaccccagaattctggagatagggttttctcctccctggggtttatag
taggtttgctctcccttcaagtcaacaattgaggaagggcatgtatttatgttcctgcta
aatgtcatctgtttgtaggtttcatcttcttccaaggttaagaacttgaaagtgctggcg
agcagaaaagccagatttaccccatgaagaaaaggcaggctctccttggctgggagagaa
ggtgcaagggccctttgtaggccctgtcttcatcattcaaatgcttgcttcttcctaagt
cactgctgagctagctggtgacagctaagatgcagcctcgatctccgaggctgacagtgg
cctgaagctgttccctcggaggctggggaatctggggcactgctgattgacagcgttggg
aagaagtctcttgcatctcagcttcaagtgaagggacaaaaagacaataagaaactttct
gaatgaatccccagcctggcacaatgacaagggtgtcccacatccagaaagattctgcaa
gtgccatgagacatctttgtaaataaggacctgcttgatgtcagttacctagaaacagct
cagctcagccgttaagtctgctcggcaggagtcaactcagtggtaaagtagtcactgtgc
actaccaggtaatttatcatttaattagctcataagttgctgattttgcatttgagcccc
atagctcaaattttctttccaaactaccatagagactatcttcttcaccttgtgcacaac
tccagcagcgtggcgcatacggggtagccactcagaggattctctacgtgggatttggtg
cagtctccagtcaagaaaatagattaaactctcgaatcaagtcaaggacactaggtcgtt
ggcttcacaggaaagggttgagttgcagtcacagttcataacattcccccggagtcacag
gaatactaaatacgggggtgttggaaacacataaatgaatattgtaacaccacagaagga
ctggagagatcgttctggatccacacagtcatgagccttttgtcagttcgctgacctaaa
acagtccatagcagatattaataaatgtgctgaaagagtcagagaaactgttcccgtggc
taacatcacagtggacacactttatgatgaggctgaggccttcaacccttcaaccgcagg
tttgttaggattcttttttttaaggtagaaagtgaggaagagaattaggtatatttcctg
ctgtggtcaagctaccaagtgccacagataccccatggcacagcctacgagattttaatt
attctgccctcattggaaagtgttatttttcccatctttagatgtgtacattccagtgaa
caaggtaaggggggacattgcgggtgaatcctggcccacctctagactctggaagaagga
gctcagaagccctgggcctgctcagagctcctagctctctggtcactggcgtacaagtgt
gtaagaaatcagcccgtgcatttcactgctgctaaccctttgcccatttcccccttcctg
cctgaactcctgtctaacctccttccctggtgaaattctatttctacgaaaaccttctct
tccctGAAGAAAGCCCCTCCCTCTT
Primer
(+)GCCTATGTCACACAGCAAGG
(+)AAGAGGGAGGGGCTTTCTTC


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