Mouse element [ mm1316 ]

Position: chr6:93,768,350-93,773,377 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Magi1(intragenic)

Timepoints:
e11.5
Expression Pattern
forebrain (4 out of 9 embryos)
hindbrain (rhombencephalon) (4 out of 9 embryos)
midbrain (mesencephalon) (4 out of 9 embryos)
Embryo 1
Embryo 2
Embryo 7
Fasta sequence
CTCCAACTCAAGGGGATTGAtgccctcatctggtctgtgcgtgtacctcctgtacaggct
tcacagacacacacgcaggcaaaacagcaatagacatgaacatgaaatacggaaatgagg
acatccaactgatcctgttatactgttactaaaattctcagggtcaaaccctgagtttgg
aagctccaacaagcccatttaaccaaccatcctccatgtatcaaagagacaaggagccaa
gcagagccgagaaagaacacgattcagtggagccacactggccaccttcagggtgctgct
ctgaggtttcggtttacacagagtgtaagagctatgcacaactatgcagacccagtgagg
ctgtgactctgcccatcactgtccagtctgtcttacaaagtaagtggtcaggactgcgga
acccttgggggaggtaagtttggctggcactaggatgtcaattgttccttccctcaccat
gaggtttccaggggctctttagtggttttgttttgttttgttttggtgggggtggggttg
ggtggagggcattgtttcaatagtctgataatacaagtgtctctctttaaaatcctctct
cctaccaggaaggttagaattactctgcctgcatttaaaagacaaacataaagtaacttg
ctggtggatcagatgtccttgctatgtaggagagaataatgaagacttaagaacattttt
aacctggacaaatgagcaatgctgtttataaaaactgaaatcatggaataaattgtccca
agagctccctcttgggggggggggtcgaaaagttcaccttagttgtgttaaatttgagat
tgaccctttggtgcagaggaggaacatctgaaggtcaaatggagactgagacatctggag
ggctcagttagcaagccagggacatctgatggaatcctctaagaaagacaatccaaggag
aatctgtaggagaagaagctaagaagcactggctggacaggaaacccttctactttccat
tctagggatgggaggaagactacaatacagttgagcaggagtctgggggaaagaagcaaa
gaagggtgaggtcccgaaaccaagagaaaaaagttgtctagtcagcaacttgtaaggcgc
tactagccaacgccaccctgccccaccgtgggacagggatagagtctctcaggacatgct
gcaaaaggatctgcttcaagtttgttcttggggtaaactcacactcagcctgcatccaca
aagtccatgcaaaataaataaataaataaataataaaaaagatgaggagaaaataaaacc
taagaaacgtccttgagcctctcgggtcttcctagactagagtctcctctccctcagccc
aatctggttcatatttgccaattctttttttcatccaatttgccagatttactttaaaga
caaccagtcacccctgggtcttaatttcctgaaaggattggaagtaatacggaacttcaa
aaattacattttacaggaaaaatgaaactgctagagacactgtcttcccaagaaaacaaa
tctgcttcaaactgcttctgagctgcagggaggaggtaggaaggcgggtgcctctccacc
cactggactcacagggcttattacccaggcgaaacctgtcctcactataggctaccaaga
gggtgactcccagggatgctctgagcaacccactctggacctgggccaacttcccaggat
ccattcagagaggatgctggggaaaaggccatagggaggggctccgcctcttcttttctt
gtaacagaatgacaggctgctggctggacacacgcctgacagatggcatttcaaagggat
ttcgggagccatctggggtgggtacaattattacaaaccgtgcttctaacaaagccagaa
gggttacttcctgaaagaagagaagtaaaacaaattctatcatgttaggaagacacataa
aaatataccaggctaacaaactcgggttttctgcagcctaaaatgctaccttctgtttgc
cgagctggaaaccaggccagcaatatcttccagttattagctttaagcgcataaacacag
cgtttctcttctttgagaaaaggagactatcaaacactggggaaaacaacagcttctagc
tcctagatgtttacatatagaaaggcattacacatttaatcaacagtatatttaatttgc
acaaaaaaaaaaaacccaaaaaagttggattaatattatattccctttgctggtgaagag
cctgagattcaggcagggaaagtaacccatccacagctatagaaaatatttgaatgacaa
cagttcatatcatcccccattctaaattaggctcgtccaacagaaccttctgttatagca
ataatgcttcattttggtgctgcctaacatgtaggccctagcacttaagtggctattgga
aagtggttcctgggtccaggaaatggctcaggggatgtggtgtttgccatggacacatga
ggatctgggttcagacccctagcatccacataaaagccaggagcagaagaaattctagtc
tgtaattctaatataaaaatgggtagtggatcagagcttgctggccagccagtttaacca
acccgtgagctccatgttcaaagagagactacatctcaaaaaaataagatggggaaagaa
tagaaaagatgcccaaagtccacttctggcttccacatgcacacacaactatacacacct
gcgtgcaaacatagagagatacacccagggggtgtggttggcactactgagcctgtggga
ctgatttcaatattattttcttttaaatgtgaagaacagctgccaatagccagcagacta
gccaggatacctctccccaaagggaatatgagttactggttttacactgtgtattgatac
agtcccctaaagacttctagctctcaaaatagcaggaaacatactaatcttaaacagcaa
gacatcttgaaccactatttgaaaatctgacatttaaaagcccgtaaatgctttcaaaaa
tgatctagtcaaagtctgtgtttttgtccttattgactatgttccttggggggaaaaatc
tagatattttaagataatttgtgatagcctgtattgcaacgagttgaacaaaataaaata
aaataaggagggaaaacaaggagcctacacaggggaacaacgggtctgagcacagcagat
gtgccctcaggagcaggtctagctctgtaactgcaaatggcaggaatggttagacggcag
gcacttgccacaaggaacgctagcaatgtgcactcaagtgacacaaacaagtcacggaat
aataagtcactattgctgcatttcccccaagagcagaggatgaaagcccatgctttgtaa
gcttatattctaacagctcaacggttcgaggaatactaaactcaacactgggcactttcc
agagggtggctgcagcaacagtgagagaggaaacagctgttcctttcagtagctacctct
cataatctgaactgtgttgatgagggtgtgtatttatttctgcatcttataaaacaatta
cttaaatatttaagacctaagtctttgacactcaacccaaggatctttaatctcaattta
tttcccacaaaatcatgcaaacaaactataggccccagcctgctacactaacaatgcatt
tcaaggtttcccaggtgacaggaagctaacaccaaggtcaataccacacaccttcagttg
tggagaagaatatagtgcaaataaagttttagagaaagtggtactattttcccacctgat
tttattttcaaaccttaaagtgttcaatcattgaagtcctccttaattgtcttaaaagga
ctgataagtcagcagtacctgaacagcgggttccccaaccctttctcccaccagatcatc
agttaatctgacactgtgctactgaatgtctcggtgagaattagcaatggccctagagtt
ctcctagcaaagtctgagtggctatttgcttcttatgcacattttatggtccataaactt
ttagtgtacctggcttcagtgaccctcgctgaggaaatcagaaagtgaccttctttgcca
tcacactctgctcagtgcagctaaggagaggacactggatagaaagcccttctagagatc
cccgtacgacccctgaggtggctggagagaccctagagctgaaaccctgctgctaagctg
tctcctctcgtactgactcaggttaccaacacaggcaggtttccagacacgccttctcaa
tggagttctttcccagcagctgtacagtgagtctcaggtccagcctgctaacggggccac
gagcatcttactcagatccaacagccaatgtgtaatgttatcatttgctgctacattaat
ttgagtcttgtttatcaaagcctagcatgacttcaaggagattactttcatttcatggtt
taggacagttgaacatgctacacacagacagcattttatcttgtaatacagctgcttgca
tttcttagacatcctagatattggatgatgaggccagccttatgctagtcgttcttcagc
taatgtagacggagcacagaagtgcgcactgccaccatctctctagcttactccatacta
acatctcatactactttgttttacagctctgaaaactagcagcactagtaatgttagttc
ttcaaaccaaagtatttcaaaagcttcaacatgacaatttattaaaaagttacgcataaa
tgagccatacattctaataacccaactcttgtgtttcttccagagaagtgaaatacaagt
ttacaaacacacacacacacacacacacacacacacacacacacacacacacacacaaac
actcataaagcctcatttgtaatcacataaacacacataaagcctcatttgtaatcacct
caagctggaaatgacccaaatggtcttcAACTGGTCAAACTATGGCGC
Primer
(+)ctccaactcaaggggattga
(+)gcgccatagtttgaccagtt