Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1314 ]


Position: chr6:91,094,557-91,099,332 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Nup210 - Hdac11

Timepoints:
e11.5

Expression Pattern
forebrain (7 out of 7 embryos) 
hindbrain (rhombencephalon) (7 out of 7 embryos) 
midbrain (mesencephalon) (7 out of 7 embryos) 
trigeminal V (ganglion, cranial) (4 out of 7 embryos) 

Embryo 1

Embryo 2

Embryo 3

Embryo 4

Fasta sequence
ATCCAGGGTTTAAGGGGATGaatcgaattcaaaccatatcagacccattgggttgggtga
gggagagctgggctcccagagaggatgctgggccaggagccccaccagtatccagctccg
tcatctaggcttctagacatcagctcttctctggcaactcatgaatctctgtggcccaaa
cgcaagctgaatacaattacgcctcagccgatgggttaggtcagcctgtgggtccagtcc
tttcctagaggacaggtactatggagggggatgggttaggtcagcctgtgggtccagtcc
tttcctggaggacaggtactatggagggggatttgtaagtttgatgtatagagggaattg
tttcaactttcttggcactgagctcactgggactttcccaggactgcacattttttcccc
tctaaagcattataatttcttatcaattcatagtcatccaaattcagagagatttcattg
tatagtgagatttcactatataaagtcactatgaacaatagccttgggcttttcttgatg
atggctttgaaattgcactggctgcctcccgtaggtcagctgagtgtattgcatatattg
gctttgatcagtgttcaggttcatagtacatttgcagactgttgtgagctgctttgtgat
actgggaactaaacatgctttgaaatgtgccctctcacccgtcccaagaaggaatcagtc
aactattaaccggcctgatttctagctcaggaaaccaaagctcagagaggtaagccagtc
tgcccaagagcacacaggagtgggtgaccacctgggagcctccagcctctgcttagagtt
gttggaaatgggtctgggatcctgggaaaagaaccacacaatccaaagcaaggcaaacat
tttatttctgcagggggaagcacggccatgttgactcaagcaggcagtacacccaatggg
agtcccctgggtcctgtgtttcacactgaatagccatattttctgtttaactatgagtct
gtgtgtgggcttgagtgtgtgagtgcaaataggcactgggtccactagagttccgggatg
ctgtgagcgccttgacatggctactgggagtcaccctccagccctgtgcattctcttaac
cattgagcctcgagtcctccggcctcagacttactcattgtaggctaactgggaacagca
caggcgattagtaaccctgagcacatgctgtgctgaccctgaaggaatctgactttctgc
caagcagcctctttactgtttgtttttaaagacatattttcatttcatatgtatgggtgt
tttgcccctgtgtgtaactgtctacctcccatgagcatgtcctgtgcccttggaggccag
aggggggtgctggattccctggaactggagttacagacagttgtgagctgctgtgcggtg
ctgagaattgcactggggtttactgcaaaaacatccggcgatcttagtcactgatttgct
ttggtagcccatttgttcttatacgacattctgtcctattttaaccctttaatagagaag
acagcccatcccaggctgtctctgctggcagagtgggacaggctttctagtgcagtagag
ctgctggataaagcctgggaagcctgttgagtgtgtgtttcacacgacagaggctgtggc
agcatggtgaaggtagacacagcccacgtggatctaccgataccataaaatcgcttgtta
cttttaaactccaaatgcaactggacatcttgcaattttatttgctaaacctgatgacta
taagttggggaaggcattctgtggtcactgtggtacaggtcagagatggagccaccatga
cttggggagttacaggagaatccagccttgagtcctgtcattgtacaaaaaagcccctgg
gtgcctgggaaatcctctgaagtttctgatgtgtgatgatgggaaaagcagcttcctcca
cagacttcccgaatgttcctgtcccctccccagctgttctgctgggcagaaccgtgaagt
ggctcccccagtggaaactggagaccagaagagtggggtcacagtgacttagagcctatg
ctggtgattgagatttccagacagggagtagctgctgctcaggaagcagctaattaagca
ggagactctaattaagaagaggagcttttgctacaaaccccagctgctgcccagcagagc
agagagcgcctgctctctcagttcaggctcctccttgtgcagcactagctcacaggggac
ctcgggcaactcacacagactctccctgctgctgttttgtaggctattaaatgaagatgc
tagccctcacaatgggcaattacagagagcaggtgtaatgtgcttctgggttgcttcccc
tctggataactccatttgcattgcagggcccttctcatcctctgtgcattctaccagagg
ccaattatcatttctagaggattctgctctgtaaagccagctgtagtgaattgttccttt
cttgtgtttctgtatcccaacttctgcttgcagatccatgcctctaggctggcaatccga
ggttcccctggggtgtaccacaccctagagactgaataccatgccaaatcatgtgtaggc
agaggtcagaagcctctgctgagacttcttccctaccatctgggcctcaggagtggtcca
tggctggttgccatggagattgcatttccatctgctgaggatgcagcttgtggtggatga
tagtaataatgaccacaattatccttgattcccatgttcacatcccttggtagttccctc
tttccaacactggctgcagactgggccatgtgactctctgtggctaatttgtcagaggga
gatgtaaaccaggccaaaaatggaaaaataacaaaaacaaagctgcgattactgcagctt
tgctgcatggagtcctggtgctgccattagacatgcctaggtaagctgcctggagcaatg
taagaaatacaggttaatggagaaacccagagcttttagtcatcccaggcaaggctgact
caccaactggccacagtcaggactgatccaagtgtgaatcagtttaagaaaactacccag
gactccgatggactcttgagaaacagtgaaagttttcattctaagtgtgtaggtcattag
ttatcattattaagttatacagtaaaagccaactgatacacagctttcccctacacttcc
gtgtttgcacctcctgcctaggtatagaatcgctccctgaatagaaagagctttcctacc
atgtataaggctgggtaatgcaaggcataagttgtcttatcttatagtagtgagcaagga
agtgctctctgtagttagcatttgtaaaatgtcatttggtaaggtatagcaaaggctgtt
aaatcatcatcatcgttttgttttgctccttttttagagacaatgtttcctataaccagg
ctaacctgatcctcactctgtagaccaggctggtttctaacctctacctcacaagtactg
agatcacaagtgtggcatcacaggtgtggccacccaactggctacatagtcactctttgt
ttcatttaacttaaaaaatatatatataatctgaaatttgaggggaaaaacaagccatgg
ggtcttgctatgctacctaggcttcagtctggccctaagtttaagaactcaacagattcc
ctgcttcagaaccctgagtagctggggttacaggtccatgccacttcacctgctacagag
tttttaaaaaaatcaaatctccgtacaatattattttgatgatagtgttacttacagtag
caaaaaaacatataaatcatctactgtccaacaacatagcatggaaatcatgtatttcca
tgatcacaatcacaaataatttgcaaacaacatacaacaatgttttggagtacagtaagc
tattgggtgcatgtaaaaccacacgggcacacactcttacatattcaaaagcagcagagt
gtcggtgctggtgacatggcccagcaggtaaatctgccatcgactgccaagctggtgacc
tgcgttcaattcctgaaacccacattggggaaaacggactcccaaaatttgtcttctgac
ccacacatatgtgctatgacatgtatgtccattcgaacacacagtagatgatagatagat
agacagacggatagatagatagataatttttaagaagtgagggctgttaatgatggaaac
tagtggggaaacccccactcaattcctgattctgcgtgcacccaaagaatcatgaataga
ccaccctgatgtaattacatgaagtagtttaatgacggagctccggaccgacatgcatcc
cacacaggagataacggatgtcagcctcgaggctcagaagctaggggtttttatggggtg
aggggcttaggggtgtggaattcagcatagcgacacactattggcttattcaaacatccg
cagaaaaattgcatgtacgtgcagggtgtcagagttctgtgagttgttgactcagttcag
atagccctgttatgtcctcacattcctctttatctttaccgttaagctgtccccaggaat
gttttaactacggggcataccccggtttatttttcttttttctcagccccaggcagcctc
taggctcacaaacaaccagcaatttctgagtactttatatgacttacaggtcttgaaatt
tcatctttctttcattAACAGTCTTGGAATCGGGTG
Primer
(+)ATCCAGGGTTTAAGGGGATG
(+)CACCCGATTCCAAGACTGTT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.