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Human element [ hs1312 ]


Position: chr5:30,994,283-30,996,047 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LOC101929681 - CDH6

Timepoints:
e11.5

This element was originally annotated as negative in PMID:19212405. Upon further evaluation, this element was found to be a reproducible forebrain/midbrain enhancer. The annotation was updated to positive on 4/13/2017.

Expression Pattern
forebrain (5 out of 6 embryos) 
midbrain (mesencephalon) (4 out of 6 embryos) 

Embryo 1

Embryo 2

Embryo 5

Fasta sequence
TCAATGATGGCAAAGCTCAGgtcttgaatagcattcgaaacatgagaaagtgaaaaccaa
gtcaattatacacttaaattaatgtagagaagagccttcagtgataagcttgtgataggc
tagaatgctagaatggagagcagatagccagttcttcaggtttcagctcagggatttcat
tatcaaggaggaatttcctgcacagccagccatcactctgcccagatgcctttgtcaact
gacaactccctgcaggttttattcatccctgaatctcagggcctagctttggcacatata
gcaggcaacatattcatcttggccaatctaaactgaaactttgtgaggctttgaaaaaac
gcgaaacactgattccggattattggagaactgtattctattctaccaatatttcctttt
gtggtttatttttcctctagtgtaatctctttgctctctattcctttttttctcccaagc
atcattgataatcttgccccattacaagaatacatatatccccctactaaataaaagtta
tccacttaagtatgtttttatctgtgcttcttatacatcattatggcaaagtaaatgtag
ccaaagtaagtctttccatctcccaagattactccattaatttatggttaatttcactaa
tttcaatttgtcttcaagtggtttgcaatgaaatatttgtaatgaaaatatgcaggcatg
cttagttggggaattaccttcatattccacatgagcccatgcctctcttcactgaggctc
ttccagcctctcaaaggaaatgaaatgggggtggggaaaaccagagtgagggcaagcttt
taaagaattgagtgggtcatggatgtgctgaccttcctggaatgacatattcttagtttg
aaaagggatatgagctgtgggtaatttgcaaatgaatgcatctgcaaatgaatgaatgca
tcaaacacaatgaaaacattgtgtccgagattataccatattgctcgttgcagcaacttc
cacagaatttgtttcttcaccatctgcaccagttctattacactattggacacgaggcct
tgaaaaatgccagccactaagaatatcttgtgaaaggggctgtgtgaacagttattatgc
ttgtgttacttccttaataccctttttgatgaaaaagaagaaacctacatcagaagcagc
acttaaaattcagtttggagagtcttctggcctccactgagtagcttttccccctaatct
ctttcttcttttcttctttgttacgtaataacacgtttgggctaagagaaagctaaattc
tcacacccatctctaaggagcaaaagcttacttttaagggaataaatgaataacttcatc
atctagattttacaacagatataagtatgatctagtaatgacattttaatattgacatat
attatccacaatgtaccttttttcactccaccaaagtactcaccttctcataatttcttg
cttatgagcaattgaattccaattgcatttttttaagtaactgtattcctttcatacata
tctagtttgatgattgtatgtcaaaactagcactaacaaagctaactaaaatacctaaga
ctgaattaatttaactactttccatagttgggcctacaccggaaaaatgggaaggatgca
cccttggttgccgttgtgtctcttattttcagaacatgtgtttgctgcagaacagtgggt
tttacCTCAACAGACTCCTGGGCTC
Primer
(+)tcaatgatggcaaagctcag
(+)gagcccaggagtctgttgag


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