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Mouse element [ mm1311 ]


Position: chr4:62,272,177-62,276,366 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Rgs3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCCTAGCACTGTGGGGTTTAgagactgatgatggggcttcccagctgcctgcctaattcc
agcttcagtgagaggccttgtcctgacagaacatggtggagagtgggggtgagggggcct
gaagttatcatctgtgcccacaccacccaacatgggcacatagaatcctggaaggggagc
tgcagagctcagctgcgggtgtcagcatctcggcaggagctaaggagagccactttcact
ggctgtatgactgtggacctgcccttccccagctccatgcctcagtttccttatctgtaa
aatccagccatctccagggctttctatttcaatttcagacttctgtgaatattaagcagt
tacaaacaaacaaacaaacaaacaaacaaaagtatagaccttttcaaagataagtaaaga
tagaaggcagggggctggtgagatggctcagtgggtaagagcacccgactgctcttccga
aggtccgaagttcaaatcccagcaaccacatggtggctcacaaccatctgtaacgagatc
tgactccctcttctggagtgtctgaagacagctacagtgtacttacatataataaataaa
taaatcttaaaaaaaaaaaaaagatagaaggcaggtatgaacccccagagatgcatagcg
ccaatccatcctttatcactatgtagttttcttcctctgggccccacccatttctccctc
ctccagtgtatcactttcctatgttatcagtatctctcggtctgtctgtctatctgtctg
tctgtctatatgacaactcctaaagacacagaaccatgaagacacaatcacactcagaat
gatagtaatctgtctaattcctcagtgctttgaacatggagctaagccatttggaagtcc
tcttggatgataagcggaagctgaactggagcttctaatattgtttatagcactttctga
acttgtacccagagaacaactttggagagagatgtaactgttcccctgaaagacagacat
ttgactcatcaatgtgaaagaccattatggaaggaaatgaataaatttaagaaaagcaca
cacacacacacacacacatatatacatacaatatatacatatgtaattaaagaatacaat
cttatttgataacctgtggctgcatatatgcaaggtcttttttgtcctgtgtcagatagc
accctcaatactctggggcagcctctcctttaacccttctatggacaggatctttgtcaa
ggatagagtgacctgatatcagaaagcttatgaccagtgatggatgggtcatgcacgtaa
cacaaagaaaaaaagtgaatagaaaacatatgtcctcagtttaaggcatcaaactagaaa
taaaaatcataaaaccctatgaaacaaaatcgtttaaggctcttgaatgagtagattaat
gtgctttcccccaggatgtaataagtctcgtcttgcggcaagctgagcagttctgctgcg
cactccataaagttgcctctgagcctcgtattggctctctgagatgcacctcctcctctt
tctggctctgctcaggaggcgtcctgtgagctcccatgccccaactacctcttgtgcctc
catagcttgttgccctcgctgttcatctgtcaatctctctctgtctagtgccaggccctg
tattgctgtcttgaactgctatttaaattcctgcctatttgtcatgtttccttaacactg
gggctccatgcccagcgcctgccaaccatgggcgtgatggattcccccatttgtcaagcc
tttgccgagtgcagaagcctggagctggagccttggcagtaggcagggaccgaggcatgg
ttccagagcctcttcacggagggaaattgccatcctctcctgtgagggcccaagttggta
agccggctggtcggtgccttgccgtatgctcaggctacttatataagcagttcttcctcc
aaagggttttcaaagcagcctttagaagtagctaattgaagaacactccgagagaggtcc
ctgcttgtggacgttaattgtgacagtttactctgcctgaacgatcatgaaatcactgga
ggccccttagcagggctgcaaagctcaagggaggctattaaccatttagcattctctaag
caccagggaataaaaattccacttacagcagagcagggggaggcaatgtttattacgacg
aaagcccaagcctggagacagggaagtctacagcggcagccagcattgagtgcagagcgt
actttacctcactggcagccaggactctcccaaatgtgctgacgagaaaaacaaacttgc
taggagcacattggtagagtctctaaaggctatccctgaatggcagctatctggatgtct
gctgccgtggcagtctagcctgcttccaagagggaagagtgttcagaacggcagggtagg
aaggtgaaggggtacttagttagggtgactgcattaccctccttgagcaaatcattaatg
gggccttgtatgacggggacaaggagaaggaggtagccacgagtcactgctagagaagca
gccaatgatgccatggagtgagatagccgtggctatggttcagaacatggattgacaggc
aggtggcagtgctccatgcccctgcccctcacttggcttgggtgcctgggagaagctagt
tttgttgtgcttacaactatcaggtggcaagctgccaccctttccggagaatccaaacaa
tatgtatttatggaagcttctcgacctcgccttgaccatgggtgggtacgtgtagaatcc
ctggagagctttccctgtgctcccatgcccagacgctaccttgaactaactgcgtttgga
tctaggcacgaactctgcagctcaaagtctcaaggcaggttttgtaggcagccctttgag
gctgctgagaactgcctcctgggcctgacccctgaagactggcttcctgggaggtacatc
tgcagggagttttaccaactccccctgccaatcggggcaggccagatgctctccgtgggt
ctctcagatagtgagaactaggctgccagggctatgctccagtctaaatacgtatgctgt
ttctagatagtaattaaaccagtctacaaagaaatctgagttgagagctagagaaagaaa
ggaagggaagaaaaacaaagcagaatcaaaactcacaaaaggctcaagtatcaagctcaa
gtagagtgtggtacaacagaggtccttaaaaataccattgcaaaagcagtggctgttccc
ctatgatgatttgaaagcaaaaatcgctaacaatcccacctaccagacacagccattgtt
tctcttttgtggctctgttttccatgaaatttcaggttggcatacgccaacaagtgttgg
catttcattggcattcatcgatggcatcgctattaaaagctgccaatcagttcgtgatgg
ttggacattctctaggcactttgaattcctgctacccaagaggccccagttcgaactcta
cccctcaccagagtctggcaatgtatgaggcctgaccttggtttgtgcctgcctgccctg
ttgacagtccggtcagatggtcattgtgacttttgtatgtcaggtatgtttggaactcgg
actccagccatctgagaactgctaaggtcctgcttggctgtgaggcaaggctgtgtgagt
ggaggccccataactttctgcttactgcatgtccccagctgaggtggtggctaagaatct
ctgatggggacaaccctctccacctagccagcactaggacagctaacctcctcaaggtag
cctgagctcccatggcatcagagagtgcagcatctgctcaggttttctcggacctgacta
ataaatactaagtattctgtgaccttgggaaggggaccgaagtcaatactaagtattctg
tgaccttgggaaggggaccgagcaagcttggtgctttcctctagagactgagtagaactt
ctctgcccacctcacaaagtgggaagaaggaaggaactgaagcaggcggaggtgctctta
ggaagccacgcgtagactgtggaacctttgacttccttgaacagaccgtgggagactcac
tctctgctctccttccaggcagcatacgctTATTGGCTGCATGAGCTTTG
Primer
(+)ccctagcactgtggggttta
(+)CAAAGCTCATGCAGCCAATA


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