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Mouse element [ mm1308 ]


Position: chr4:97,313,903-97,317,906 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Nfia(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTCATGGGGACTTCAGAGCCaggctgactgtggctctgaaagaatggttctgccactgct
ttgtttgacagagtttacagcaggtactcagtactggctacacaatattctatagaagga
tctatctcatgtcctgtagatggcaggtcttcctaagtcattcagtcgacaaatccttac
taaggccccatacagtgcctggcaaagtgttgcctactgtagtttcctgctatggatacg
gggaaaaaaactggcaaccaagcaggcattagacaaataattttacacacacacacacac
acacacacacgcacaaaatgaaaagccagttgtgttctattctgaattgctcaagaagcc
ggtgatggttaggcaaggaagtcagttgttgaatttctatggcttcagctacttcatgaa
ttagagatggcaagattggatgcagttaaaaaaacaaaaatccctagcaaccatctagga
gaggcttgttgaggcttgcaataaatcggggctgatggagacagtcctggactgacattg
ttgggagggagaagagggagtgaggcagagatgtggtattaatggcacccctattgccag
tgttgctgcgtaggagggggagaataacactaatcatcatgcacgtggctagcttggttt
ccctgtccagggaggcaagatgccaagaggcacaggtgttccctaccatcgaaggaggct
gctccctctcttgattgcataaacaggcctcctgctttcctgccttctcaacatccagtc
tcaccctggggagtcctggccgaccatccagggtgctcaccagagagggaaaggattgag
ggggtctgagtgaggatgagggcaccttctggccaatactgaggagttgttgctcaggcc
ttacagaatctgcaaatgctgtgggtccacctggggcagcatccgctctactgccatctg
tttcctatcgaggctgagcacgctcgtgtgtgtggtcacaaacgcacagaaaaatcattc
tgccaataaatatggaacgttaggcttcgtttgttttttttttttttcctcttcctttta
actgacttacaaagtgaaccctgaaaattctgactccttctaccatgcttcgcccaatcc
caaggaaaatataatgacgtcacattccccttgaaatctatactttattgaagggttggg
cggggggcttattgcacatgtacaagggccaaaccaaaggaggaaatgtgagcaaagtgg
ttgcatccttttgcagtcaactattataaaatctggccatctcccgtgcttcatgaagac
atacagtttccaacaggcctagttttactttacataattgtaaccatctcagcatgtcaa
ttagcatagaatgttacctttgggatgggatcaattagagacctgaagattgaatttgga
atcatgattagcccgttttacattttgccttcattttctaaaatatacaattgtctgatt
cagcccagtttttttttttaaaaaaaaaaaaaaaaaaaaacgtattgtaaacttatttat
tttttaacctaaaacagacatgggaggctggttagtaacaggaaccatggcaaaatggag
gatgggggtgctatttgattagagcctattcttaaatttccacagcaagaaaatattgag
agtagcggaatggttgctggattttcttaagagctgaaatcattatgctctggcggagtt
ccaagttcttctctttttttaggttacaatttgaaacggtgcagaacatgctatagtgtt
gtagtcattcatgtaatgtcattgaattgagcttctggaaatagacaaaggactttgtgt
cccaaaatgttcttctggcggaaaattgatagcagcatgagatacgctattacgagggtt
ggttctgcctccaaatttgtgctgactaaagtggagagagagaaagagagggagggaggg
agggagagagagagagagagaggtttcaaacaatgctatacacatttccaagaggagctg
tagaagttttcccggggttactaaaataatgtgaagctctttgtttgcttttaagttgtt
tcccaaatggagacaatgaacaggcaaacgcatgacatgaaatcctgggctaattctccc
aagccctccctgcccccattccagccctgagaagtgtttcccgttcattgaagccctgag
tctggagctcttgccagattcgtcagagtgacaggcgagtccagcttcagcagccagaga
tgcagcctgaatgcaaatcaaggctaggcctgggctctctggccaggacacatggtgttg
ggcctgagctcatagctggccaattctttgccctgatccctttccaagctttgccatctt
cattgctgccaccccttttaggaagaaaagttagagctgtttgtgcatgatgtgaaagat
atgccaataaagcccctttccatataaatagcacatcaaaatattaccaaataatgctgg
tgactttgccagcaggcagaggactccatctggagataatatcttccaactgagaggcgt
ccaaggtgccctttcctaggcaacaggcacgctgacccacatggggctaaatcccattct
atctgaacataagcaatccttcttctgctatacacaggccacctgtgccggatcccggag
caaacagctccaatccaaaattaactcattggtcatttcctctgagacaagaacagcgcc
atccttccctgaccagtctgatgatgtctgtacattctccagagagactcgaaatagtaa
gtacaggactaaggacaagatccctcaatacattctgttacctgctctggtccactcagt
gacaataggcgagctcactgttgggtctgctctacaaagcatctaaccgtctaagtcaag
tttcccagcttctctgagcacaaggatctctgtaaagtttgcaaccagcatctggatgaa
atgctaaactttaaatatagaaggtggactgtcccaatggcagatagtttctaatgcaca
cagagactctttcctgttctcttggttcttcctcagattcctggtgagtggttactagac
acaggagcaagggtgagtcaaatatggatagggtcccctagatctttataatcagttcag
agtttcagttcttattatgactaaaggtctctgaggtttcttagagaggcctgcgttctc
tgcttaccctggtcaccaagttccttttagaggactattgctgacttggtttctgcccac
ttaatctgaaaagtggccatttctccttacagtggactgcaaagcatgtgtgggtaaagg
aacacttttgaagagctctctaggctatggcgagagcactcagagaattctcttgcacgc
tgatgttgcactaagcaacagaggcattcagacgcaccttccttagacttccatattttt
cttttttctccctggtttagcatcacctctcacagttcctaattactgaaagaagttatc
taaattgctgaaaatacaagatttggaacaatccctcttctaggggcagggggcatagag
tggtcactgaaaggcagacttaaactttcataccctcatatctcaaagactattaacact
agatcagtttttacaatggtgttaaatgtaaaagttctctctggtcatgtattacagagg
tctgatgccattcaattctgtcaccagtcatgtcctgaatcccttccattctaggcacga
ttctaagccctctcagcacacatccttatgattccccaccacactttttatctggggaaa
ctgaaactggggaagggccacacattgtccaggacatccccatctatctttttaaagcta
gtctcccaatcaatcaattactaaacgtcctacagctgagcaagtgttaattgccttcaa
ggtataaagatagatataaaggccTGAAGACAAAGCCCCAGACA
Primer
(+)TTCATGGGGACTTCAGAGCC
(+)TGTCTGGGGCTTTGTCTTCA


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