Mouse element [ mm1306 ]Position: chr1:38,253,589-38,258,706 (UCSC browser) Source: Lawrence Berkeley National Laboratory Flanking genes: Aff3(intragenic) Timepoints: e11.5 This sequence did not show observable enhancer activities at E11.5 We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution. Fasta sequence CATGTGGTTGCTTGGATTTGaactcaggacctctgaaagagcagccagtgctcttaaccg ccaagccatctctccagcccctattcctcttctcttaaggaagaacatataagctggttt ttatcaaggtttttggagctgtaactcctcctcccttagagtcaatctggaaacttactc cttgaccagtgtttctaaaatatggtttctgttgtgttaccatcttgttctaaaatcaaa ctctggggcctctgaagtcaaatcttagttcaggctagggattcatgagggactttgggc cacgtctgcaggttccatcagttttgatggcctgcctccctggtttgaagctctgtcctt ccttttcactgcctggaatgctgggagttccgctcactcgctgagagctcactgaatcct atcatgaaccaaaggttattccccttggagtctggccactgtcaggagctattagcatag gccttgcttctgactctttcccaccactacagagaacttgtctgtgctatactcggtggc taattaattgccttccaagtttacggggctatagttacttcatgtgtgcagcttggccac gggtacatttcagcgttgacctctttggtcttccccagcctgcagtcatccttgaattgc actgaatttcttctgagcttagggaagagtgttgccttctgagagggtgcggcatcataa accaatgagccggagagtgtctccatggcaacttgaaattctccacatcattatctgctc tacactccagtatctaagtttggtcattttgttgcgtgtgtcctgtttcgtagacctcac cactaaaagattttcattttaaatgcattttgttcccatgaaaaaaaactgtcttgatca taagctatggcatcttagattttacagattttctaagttactcttagagatggcaggcgc tgataggctctaatgtgtgttcttcaatcaatgttgtttttatctgtagcacatgaatgc atctttcaaacctgatgtggagtccgagtcatcgacacacagcagtgcctgtgggtaagt aacacatttaattttctgactggatcctggcagctacaacagtagcctgccatgttaaag ggaaacccggtgccatctatggaccatttacaaacacgctcgttagaatccgctttgcat ataatggagggctcactatactaagcacggaaaattgcctgaagattggcccattttctc ctctcaggtgatttctgctgctatgctcttaaaccaggccattataaagccattgggacc aatgggacgtcactcagactgtccggcgtggctgtggactcacgttactctgaagatgtt tcttttcgcagctgtatacaagtcagtaggaaaaatgaaattgtccttacacctgtcaga ggttcagaatctaatataccaaaggttctgaaataaaactaatggtctcagtgcagaata catttttcacccgacctgtctttaagtgggaaaatctagagtctttacacttctataata ataccctgtgtgttatttttcatagtgttttatgacggtcatgaacaggccaataaacgt gcaattaaacactgcaaatggaagagcatccagcgctccacagaaatcgggactggctaa tggcagagccagagctcagtcgtgtgcacctttgtgctaataggtcagtgtaacaaaagc gactggtgtgcttgatccaaacaggacgtttccttttcttttcttccatcagcatgatct gcagacacatagtcttggccctgagcggcagcggcgtgcaaaggacctgacacatcggag cacaggagctttagagaggacttgggttttttgttctccttcctggctgagggagcagag agatgaatggcctcccacagagaggctggcacactgctttctgtaattcctacctctttg aaaggccgtccttccatagagcaagcctgttttgtgcaaaatggcagggatgagagctca ctgtgtttgaacaaaacaggttcctgggcgtggagcaatcgggatgatttgcttagagaa actgaaatctacaccagacagaggagcaacgatggcatcaaatagatttctctttcttgc gataccccctgtatcatttggcatgccctaactgtgtccttggctttcaggtgcttgttc caaaagaaggccgatggtgcaagaggttgaatgtttccttttcacacacaagctgtttgt agtgctagctttacagagctgggtgacaaactcagcttcctgcacgccaggcaagtgttc tcccgcctgctcccttccagtcatcactgttggtgggggatgttaggagactggggctcc caggtgttgctgtctgcacacaccctgttgaagcagctagacagtgtttaagcagtaaag atccctacgcagctttgttctttgatggatactgactggaatcctaaggagcttggaact tggtgtctccagaggggaagcaccctacgccgcatgcgtttctgacaccactcagagtac ctttctcaggctgtgctggctaaggcaggcaaggtttgaatcatttaagcaacttttatt gagatggaaaaccatccatctcactgctgttcttctctgcgttggatgtttcagcaatcg attttagcagggcctgaaggtttcagtaagagaaggatgtatccttttccttccatccga cctttctgtttttccatccatcagaataaagtagggacccaacctgaatatgcaatggaa acagttccctaagaacaaaaaggtggggtccagctttgctgcagcaaggtctccctcagg acagcagtgctgtggaaaggtccccagagtgccctgcctatgacaatagggcctatgcag acattctacttgtttcctttgattaagtcatgctgtgggagattcaccctctcatatgca ggaatcttcccttcctctataaaattaaaatccttttagctaggagagtgcgccatgtaa ttaccttacacatggtaagccccagtcccttcctgccattcacacttaccatgctcacgg ccttcagtactgcgtgttccagggagccctcattcagctcaggagggatagctagctctg cttctgctcctggcatcatggggacagatgggacatttggtagatgggctgggtgctctg gtcgtgaccgcctcttccatggaaatacgggcagaggacagtacatccttcagagagcag caggcagtgctggcctccagccccactggcttctaacacagcaatacggctggcaggagc cgggcttcattcctagccaagcctttcaccatgtagctccatgaattcagtatttctgga ctgaggcttcccatgccatatctctctcaattctccccggccaaagctccctgtcactaa ttacaacaccaaataatacacagctcgctgctttgcactaataagaccagcatctaagct gcgggttgaaccaagcaccgccgctccttgatataaattctcggatcctgtcttttcaaa gaaaagtctgttttccaccttcctcctgaggctgtggagtagtaattgtccctgcttttc atgcttttgtggaatgtcaggggaggaggggctgtcagactgctgctagtctgcgcctgc agcttaccaagagcaagccgaccttgattcaggttctaaaataagagctaaccccttcag ttcatttgcatcctcagagcactaactgctgcttaattggtaagaaacataggaagtgag gtgtggaaggcatgaatctaagcgctctttcatgcaagtttatgggaaaagaaagaaaga tggaaagatccaggccctcccctgggaaaggtatttataagtcagctatatttattcagc acccattcttgacagcctggtggcttcagttgtctgaattgtatgtttattcaaccatta acagtatttataatacaaaaggatgaatttccttttttaaaaaaagctatgtgcagggga gtcgtccccctctgtggagaaggggagaagggtggaggaggtctggtgagagccaggacc cagaggagagggagaggggaagatgtgactgggttgcaaagtaaataactaaatcaagga atgaaacaaactaactaagccagagtgtggcacctgttactttttggatctttctagttg tttcctatcagcttctcagtggctctgccctaatgatctggcaccctccctttcttctcc tggcagcttttctgttcatctcaggccccattgatgccccagtgaagataagccaaagaa agtggaaggggctgaggaccttcttgaccaggaagctgccagggcagaaaatgtcaggta aaagaggaagaaaaggaagtgagagaggaggaaaaggaagtgagaggagggaaggaaaag aggaggaaaaaatccaatgggaaaggggagggcaggaagggtttatttgcatcactcgcc tagggatggtactgcccatagtgggctgggctcctacaccaacggacactcaagagaacg ccccataaacatagcctcaggccatttcttatggagacagttgcttaactgaggtttcct cttcccagatgtgtcaagttagaactaattatgacagaagggaaggaagaacgggggatg tgggagtacacatgaagggggaagaagaggaaaagctgatgggaactaagataaggaact aagagggaagagaaggggcgggaagaggagcaggtgtgaccatagtcacagtagtggtgg ttgtattggtccaccatgggcttctctcctctgactctggagaataacagaatgaactca tcagtatatcctggctgttgcctgtacctggcacatagtaggtgctttgtatatagcagc tgggtgtgtaagacattttgcatgttaggtgactttggtctctcgagggacagctatttt catggcttaaagggagagacaatgttggttcttggcctttcgagtttttagactcttcCC ACAGCTTTCTTAGGCCAGPrimer
|
For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.