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Mouse element [ mm1305 ]


Position: chr9:121,210,706-121,215,001 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Ulk4 - Trak1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTCCGGGAGACTGTAAACCAacctttccccctgctcagtcttggcttctctctgtctctc
tgcttcctctcatcttctctctccttctccttctcgtctttcttaagaatcagggatgag
tagatggctgagatcagtaaagtgcgactcgtgcttcatccacgcgtggtggcctcagat
gatcattctgggtcatctgggtcattttgggtcacctgggtcattctggcactgaggcag
gatagataaatggatccctggggctctctggccaatcagttcagctcagttgttgagctc
cacactagtgagagacccttgtgtcaagacgcgaggcagacagtttctaaggaatgaccc
ttgaggtcgtcatctggcctccatatgcacacgcatgtacccacgtgaacacacatatgc
acatcatccatacactaacattaaaaaaaaaaaagagagagagagtcagttggagatagc
cccgaatgtgagaactgtacgacttgaccgtatcttctgaactttgtgccctcaccttac
ccactcttcccggtacctcagtgtcactgttctcagccttgattcctggactttagttct
agataacccgatcatgttgattgaaatatgcctccatcctctggcaggtttacggggacg
agctgacgggaatcccacactcactgtgttgcttcaaagcgatttatatctgtaatatca
ctattagtcagactttggatttgaagagcctgtctacacaggaggagccactgtgttata
gactctgactttcccggttggttggtggaataagggagcccttttaggcagctctttctt
ttttcttttttcttttttttggtttttcgagacatggtttctctgtatagccctggctgt
cctggaactcactctgtagaccaggctggccttgaactcagaaatccgcctgcctctgcc
tcccgagtgctgggattaaaggcgtgagccaccacgcccggctaggcagctctttctaag
caagaatatgtgtggtgggacccgacaatttgctccatcgaacattctgggagaggtcag
ggtcttatttagttttaaaagctatgtgtgtatgtttatctctgtgaacttgctcatgaa
tgcagtacctgaggtggtcagaagagggcgttagagtccccccagagctgaagtgtcttg
gccatttgatgtggatgctggggtctgagagacctagtctcctcctcctcctcctcctcc
tcctcctcctcctcctcctcctcctcctcctcctcttttttttttcagtttttcgagaca
gggtttctctgtgtagccctgactatcttggaactcactctgtagaccaggctggcctca
aactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcatgtgcaacca
ttgcctggctagacctagtcttctgtaagagcaacatttgttcttaactgctgagccatc
tctccagcaccggcttttagaaaacagtacagcccgttggcctcatacaggctcacctct
atcctgaagaaattatttccggtttgggatgtggccaaagagaagaagtctctctaatgc
tagatgtagtttggcctcacttggctgaggtgtttatgtgggggtgtgggagctgtccca
gacttgcttgtctgaagatctcaggagacttctctgggagtagggacagagtcttctaag
ctgcaggagtgtcagccgtcttcccagggataagtccaagctgagagacctcatctgtgc
caagaagctaagagctctgcttcacggtggcaggaggcggttgtgtcctgaggaggagca
gcttaagagggtagtacttaatggggggaacttagcctccactgttttctgtgtaaattt
cggtccctgttgtagtggcacaggcagacctcaggaacatagagggttcatttctcagaa
tggggccagggcggggggcatcttggtcatagttgtcctcgattgccgctgttaccactg
ccatcaccaccatcaccaccaccaccaccatcaccttcatcctgtcaacctggagacttc
ttagatctgcagaatattagccctgctaaatccgagcctgcattttcagcacgtctccag
gcagtgtgcacagagccatcgccatcatcgccatgtgcttacgcagacaggttcttttct
gagctgaccagaccttgtggacattgggcggagtaagtcccttccctgctggatagagct
ggggctcagtgttccttgcattcgcccctgccaggcagtgaaaggaaagggcttagtgtt
ttttaggaaagatcgtcgagtccactcctcccccaaccccattttcctttaatcctgggc
aatgaactgtaaagtgggaggggctgaagagaggaaggactgacttgctattctctatca
gcagccaagagaacagccccaagtgtagtcagccgggaacactccccgcctgcctctaca
gggagctaagacatcagcaagataggtattgtttatgtatacataggtatgcaggcatat
acgtatacatacacatatatgcgtatacccactcacgtatatgcacatatacacagacat
gaatatgcttatgtatatatgactgtacacatatacatatgcatatgttcgcacagacac
atatatgcaaagatggatgactgctggtttatgatcggtctcatgtagcccaggctggcc
tcagacttgtcatgtggctaaagatgactgcacttctgaccctcctgagtgctgagatta
taggagtccaccaccacgtcaggttttagtgcttggggaccaaatcaggcctccgtgtgt
gctggagaagcactccatcaagtgagcccagctccagcccagtcttgctgagttagaatt
cacccaccaatctgcccagttcttagttggatcttttacacactcacccatctactcttg
ttttgttgttcagtgggtctaaagttttgggtcattcacaccaagcagaagtgtcacaag
gcacagtggccgagtggcagctggcgtgtaagatccaaggcccgtgtgtgccacctgctc
ttgcctgcctttcacgaagccacggacccctcgggcctctggctccccaacggtcttgta
tacagaggagagcaggcagccaatccttggcaaattattcatgtccttccccatagctac
acaagtcccttaacgtgaggtaacagaaaacctagatttttctaagaacgatcatttttt
atttcacttaaaaatatccgtgaaatatatattacataaatatatcattttaactgcttt
cagtgtgtagcattaaatatgtctgcgttgtgtagagaccttcacctacatttccaggac
cttctttattgtccccaactgaaacactcactacccattaaacatatctctccatcccag
ctcttgatgaccccccaccccaaattcctgtctctaaacttggccacaccagaaatgcca
aacaagccatcttgtcctcggtgactggctcattttgctggtttgtttgtttgtgtgttt
ttgttgctgttattgttgaagcatgtgtcaaatttcttttgtaaggctgaataatatttt
tggttttgttttttaatttttttgttttttgttttttgagacagggtttctctgtatagc
cctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatctgcct
gcctttgcctcctgagtgctgggattaaaggcacgtgccaccatccccggcctgaataat
attttgtccattactgaacaccagggtttccatcattggccactgtggctcacattgctg
cgacctttgccatacaaataatacactgggtccctacattcatttcttttgggtgtgtac
ccagaattacagttggtggatctaggagagaaagaagtcttaaccagattgaaatgacgt
gtgctgtttcattttgtagtgctgggaatggaagccacagctttgcacaggccaacttct
gctttaccggtgagccacattctgtatactgggtgtgggggtgtctcatggtaaataggg
ctagcttgttagcttgtgactctgagttgagaactttggagatggccatgatatcaaggg
tcattcattttcaatgggtccacttagccacctttcgctactgctaaaactggggaagaa
aattgaggccgtgcttCAACTACAGGGATGGGCAGT
Primer
(+)GTCCGGGAGACTGTAAACCA
(+)ACTGCCCATCCCTGTAGTTG


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