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Mouse element [ mm1303 ]


Position: chr10:60,995,425-61,000,401 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Lrrc20(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCTGATGAGTTGCTGGTGAAagactccgaggcgtgggtgggatctctggaagctctaggg
aagtaatttaaagttgggattgatggatgaggaggtgtctgcctgataagtaagctgaag
tttctgtagcagccttcagtagctttaagggatgattggtaaatgactgttaaaaatgtt
acaagaccgaattatgcagagagcagaaggatgggtctcctccactcaggcaaggccagt
aaggcttggggcagctgggagtatattatggatgaagttggaccaggaggcttgggctat
ctggtcaaccagcctgggcgtctcagtaaaggctaagctaacccaaagtctctattgtag
ggaaagcaggcttgggagagctgggctcagggataaggttctgtctggattaagtgtcag
agagtggggtgaagggcattgtgacacccgatccttggagtgtgaagctgggatgtctca
cgatttccacggtgatggacttgtttgcttgtccaagatggtctcacgcaacctaggctt
acctccaactctctatgtatccaagggtgaccactgactcccagtcctcttcctctgtgc
tgattcacaggtgcgcaccactgcaccgagctgtaatgagtgacaccgctctttctgggt
ccttccctaagtggtgtgttccctgagccctccagctgacaggaagacctctatctaggt
agctggcaccctgtgaagctcaaagctgtgctctgtgtactccagctcaggcttgcaggc
tcccctcggggcctatctgttccgggcttctcagcttaacaggctgccatcattctcacc
acaggagccctccgggtagtgactcctttgattattgccagagaaaattacaatttactt
cattgcctcagccaaaaagacaggagcacagggagcttcatcctttctgtctggcaagcc
accctgtgagaggactgcgctgtcctgcactgggagcagggggcttagggggtttgaggg
gactgggacaatgtggacagtgtcctaggatggcttattttccttctggtgtactagaaa
aaggaggctgggcatgggtgggggagggggaggtgctctggggcatgataaatctcccga
gctgtgaatggattgagccatcctcacatagagggtcagatggtaggaccaagtgcgacc
aaagttgcaggacactgcgccttcacttcatgctctccatggtcccttgtgctaactttt
cctcagctcgggtcctttagcaaaggaaagaggcaaggatagagaaaggggcggggcctg
ctggccagacacagaaggaccactgaagtggggtgcccacgtcttagctgtttctgggga
tgagtcagagctactgtcggggcacacatttcccgcttctgcagcatagatcccaattag
agtcatggagctcagaaggacccatctccacgggacagccatcatcgctgtccctaagaa
ttctaccaggaccggaggaggtgacagaggtgcgtggtggtctctggcttcagcccgtgc
tttctgtcctcatgggtgtctaatcctgggtaatgcagcagaatacaagtttaaatgttt
gtgctaactgctgggagacagaaagatcgtgtaccagagaccaaaaggcctgtagcgctg
aaagaaatcagttcccctcgcaagggagctgtgccatctgccactcacgcacctccattc
ctgctctttggctctctagccagggacagtgtgctggtacaaaggcggggggggggcaca
cccagaactcagggacagtgtgctggtacacagggcactggtggggcacacccagaacac
agggacagtgtgctggcacacagggggaggggcacactcagaacacagggaaagtgtgct
ggtacacatggggaggggcacactcagaacacagggacagtgtgctggtacacaggggga
ggggcacactcagaacacaaagacagtgtgctggcacacagggggagcaccccagtacac
agggacagtgtggtggcccacagggggagggacacatctagaacacagggggaggacaca
cccagaacactgggggaggacacacccagaaaacagggccagtgtgactgaattatctat
cttccagctcagttcccaagctcacattttccaacccctgagtgacaaaggactttgcat
ttatccccacccccccctttccctgagctctctgcacagatttcctttgctgctgtgctc
caggcccctcagtgctgtgccctcccccacccctttccatttccctttggttgctcccag
ccccaccacatctgcagagctccaccacatcctttgaaagaatgggtcctgtctgcctgt
ttatttttgaataggcaatagacacacaatgcagtggtccagtcaaagggaataataggg
ggaaataagtctctctcgttccccccaccccccgaaatctaattccctgcccagcagcag
ctgtctctgccagctcttgagatgttgctagcccatgaaatagaaatttatctagtatta
gtgacatttacagcgtcccatagcagacatctttgtgaatcccttccaagtataaattgc
ttaaaatcgttacagtcctctcacctcttccctgccctctgcctctgcctcctcttctct
ccctcaccgtgtttctagctctcctgatattcttcccttctctcagagagcacaaggaat
ttgcccaaggtcatacagcaagagggtggggctgagaccattcactagaaaagcatacat
gtatccttttacgttctagttatttctttaactccggtggatgctggtctagctagggat
gtagctcacttggtagaatgttcctgtgggtgtgcacaaagccccgggtttgatccccag
caccgctaaacctggcatggtggtgtatgcctgtagtggtaatacttggaaaatacagac
tcaagaatcaagagttcaaggccaccctctgctgcctagggcatatgagtcactcctggg
caatatgacatgagaacagcactaacaaaactacctttatgaggcttagttagggtttca
ctgctgagaacagacaccatgaccaaggcaagtcttataagggctacatttaattagggc
tggcttacaggttcagaggttcagtccattatcatcaaggcagggagcatggcagcatcc
aggcaggcgtggtgcaggaggagctgagagttctacatctccatctgaaggctgctagtg
gaagactcacttccaagcagctaggaggaggatcttaaagcccatgcccacaggcacaca
cttctttcaacaaggccagatcttctaatagtgccactccctgggccaagcatataccag
ccatcacagaggcctttctggtggcagaacagtcaatactttcttttactcacaggccct
ctggccgtccccacagttcagtcgggagtgtgtttcctggaagcttgccctgttgcttcc
tctctgacttgacacccaccggaagctgggtgtgtcccacctggcagcacgcatcatccc
ttggaaggacgcttagctgccccactgacgcctagctctgccagagtaggcagggacagc
tgttcaggaatgccgggtcagagcctcctcgctggctgaaccttgccgggtaggctggca
catgcccttacagagcagctgtgctgtcacatacaaggccagcctttccgtgccccctgc
caccccccccccaacggaatcggctgtttttctcttcctccagggttaatgggagtcagc
cctggcagcggtccaaagcatagcggagtcaggagggataagaggaacttgccgaaggca
ggtttcatctgacaaacactagataccatagctcgcaggcaggagggggtcattgagcaa
gggattgtcaccgctggggctgctcgcaccgggggtagctccagagcagtatgcagcagg
ctcttctttcgtgggattcccaagtagtctagctctgacccctaagacagtccttcagac
ctgagcccctcagccagaagacactgggcaagtcacctgggtgctgtgatcctaggctga
agagcaaagccaggccttggcctctggccatgtctaggtagaaggaatgtcaacacaatc
agatcaagtggctagggctgttttctctgacatagaaacagtaggcaaaacaaaacaaaa
ccaaaaaccccacagggccccagagcaggccatatggaagatagagtggaacagtagaca
gctttgctggccccagttgggtctctctaagccttactcgttccttttccaccagtctgt
tttgtgttgtcctaacgaaacacctaaagctgagaaatttacaaagtgaagaggttttgg
ctcccaactgaggcggctacagtggcttgaacagtaacgccctggtgtcctggctagggt
gcctgcctggttgcatcacagtgtagctaagagggagtcgctgcattgggtagcttctct
gtaaagtgactcacactcttgagaactatcccaccctgcaagaaaggcacaggtcccttg
gttcatagcctccccctctgcactcccttccccataataaacaccgtgtactgaaggaag
ataaaatattgtaacttgtgagttgtttaagagcccactgtcccgatgaaaaggtattca
aggacaaatggggctacattatctaagttcacaccatctggctggaacctcctttctgtt
accccttggcgctgagtaaagtcatatacatcaactggttgttatgtgaacaaaaagata
agcccccagcccacaggaacaaagtcctgatgcactgtgttctttctgttaatgtttgaa
taagccaatagtgtgtcactatgctgaattccacaccCCTAAGCCCCTTACCCCATA
Primer
(+)GCTGATGAGTTGCTGGTGAA
(+)tatggggtaaggggcttagg


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