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Mouse element [ mm1260 ]


Position: chr3:48,607,726-48,609,108 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: 1700018B24Rik - Pcdh18

Timepoints:
e12.5

This element was tested at e12.5 and showed no reproducible staining at that time point.

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCTGTTCCCATGGACTGTGCcttgtcaaattttgaaggattacatctttatacaggccat
ttatgcaccctaactgttaatgtgtatttaagtcagaggtctgatattaacttagcaatg
aagccgtggtaggagtgagttgtgggggtgttaaaataattggaaattagattttccagg
tatgacaagtagaatctaccagttttgttcaagttaaaaaaaatcttgatcatgtttata
ttaacttaatatttttgctattgtagaaatatctatagtataaattgattgatgtggaca
actatacagattgtaaggttctcatgtgtgcatctgcatgcaaaggggtgtgcttgaggt
caattcagtgcaccaaaacgacagcaacacataagaagtcatgctatggttttctttctt
accatagttagatactacaaaacagttttgcatggaacagctgagaccatcctatctatc
tctatttaattttaagctttatcaccaacagacatttaggagaggtttttcttcgtaaga
gatggttttatattacatgttgtaaaacacagttcaaaattacctgagtaaatttatttt
ctttaacaagtgctttataaatattcatttagaaagtcgtgtttataaattgaaatggtc
ctttgtaaatgtccaattacaatcatttgacaagtataaatacacttttgaggcaaacaa
taccctgatttatgcagatcccattagacacgactgtgaactgtaattatcctaggggac
tataattttgcctgcccagtcattcatagactttaatacactcgactgagactaaatttc
caaagcggtttcttacagtggcaatgatgtatgtgtcaccgccctttctaattctgtttt
cacttgaataaataatctcagctaggatctcattcatgccattttgtttgaatcaacagg
atcaaccagatggaataagaacaatattaataaatagtgaggcattttggctcagtatat
gcagtatttatttttgatctcacatacacacacacacacatacacacacacacacaatga
gtggatatgaaacattcatatgtaagtagtaattattgctttgatgaagtagattgtctc
tatttagggagtattatactgtaaataaatataaaatcctatacacatacacatggacac
acacatatatgaacaagaaactgcagctaaaatatgaatgtagagtttgaacaaaaatta
cattctttaactatttgaaattcgggatttatcccttctcttcacttgatagattaaata
aatttttgtgattgagtacatattgagaaataattataaatatGCATGGGGCAGCTTTGT
AAT
Primer
(+)TCTGTTCCCATGGACTGTGC
(+)ATTACAAAGCTGCCCCATGC


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