Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1254 ]


Position: chr3:158,009,522-158,010,836 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: RSRC1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCTCCTTAACCCGATTCCTCtagactactaaaaaacctgaatattcattggtatgattga
tactgttcttctgttttaagaaaaggtaagaaaagtcaatgactttctggtaagacgaga
tctaaaaaatcttagtgtttttgtttacaaatttcttaagaggacataagctttattata
gcaatagtttttagacgtagagtatatttcttttggaaaaataatgaaatttgtttgtaa
caaagggaaagtaatacctacttttaatttttttcttgcctaccatggcataattgatac
atggcatcttctcacgcctaagattaaaactatcaggtgctacctggtttattttggaca
acctcagtcttgtcccagttagttttaaaatgtctgcttcatacgtgttgagccactgca
tttcctgctttagagccttgtgttatgccaacatcactatctgtgctgcctcaactacaa
attggatgaacagcctgtgacactttttcaatattattacattaaaccaagtggattttg
attgataacctaatattcaactaatgcagaacatcaatcatggcaagtatattaattatt
taatattgcagtctaattcagaaatcgatgtgctgcatgaggggaagggaaactcatggt
tcccagaagatttaagacagggaatgattaaaaaaagacctgctgtactcctgtgtgtta
gttcgatacaaatctttattcatttgccaataatctcttcccattttccacttcaggacc
attttatcagttttgagacctataattgaattaagtctgctttcagcacagggcaaaagg
agttgcacaaatattgatgaagtcatgacagggacaacccaagagacagaccactaaaga
ggacaggttttataccatttgttgtaagatccttctgtcaatgtcttggatgttgcctct
ctattttttcaaattcattaaaactcttagaatcacttttaagacttttgtgtttaaata
tcctccatcataataacatttctatagtttattttttatcttcatgtacattatccttct
tactctttcacagcaaccttgtgtgttaggtaaggcaagtaagcctcacatcataggtgg
acaatctgagattgagaaaagttggattattactcaagctcacaggactattttgtagta
gtgtttaaatttgagtgtaggcactctgcttctaaaacgagtattatatgtcatactgtt
ttgtgttgtatttatgtactcatgatactttaccTGTGTTGTTTTGAGGTGGTCA
Primer
(+)gctccttaacccgattcctc
(+)tgaccacctcaaaacaacaca


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.