Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1235 ]


Position: chr5:132,000,566-132,001,785 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Auts2(intragenic)

Timepoints:
e12.5

This element was tested at e12.5, but did not show reproducible staining at this stage.

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCTGAGTGAAGGTTCAGGCaccatgaaattaataaaatcaccatctcaccctctctatt
gcaggttcaggaataaatcgggagaagaaatctgtgaggcacagagcgacctactcaagt
gtgaagcaatcattttctccactgacgtcttccagcgttttcttccacagtgcatttaca
ggattcctagttcaccaaagttgcttcctaaggctgaccagcactggatttttttttttt
tttttttttttttttgagtcatcgagcccaattctgtttgctaaataaattccgggcaag
agtgctctgactcttgcccaggcaaggcaagggtctaaggtaagccataaaacaatagtt
ttatcttatctgagggacccactgtattccggtgtgtgtgtgtgagtgcctgcgtacatg
tgagtgtatgtgtgtgtgtgcacgcggagcctgtgagtgtgtatttttactgccaaaata
aaataaatggaatcggcacacacatgataacgcactctttgctaactcatactaattgct
gggctaattgatgtttgttgaactttctccgtttcattgagtgattaggtacaaagctaa
cagttgacatctgtaggcgcttaactggcgtctgtaattactgttaatgttaaataattg
ttagttaattggagtggtaactgactgaatggaatccagattgggaagcagaaaagaaac
ctagttaaataaacatacattttttgggggggagaagacaacggttttttggtttgagtt
ttgttttggtttggtttttttcttgcaggtgtcagaaactagaaataacccagaagcctg
ggatagcccaagggcttcctgaatgaaggaaacccagcctggggcggaacaatgtgttag
aaagcctcacttaaagagcaggcggctttggtggctaacccctctcgctgcaggtctaca
acacagacttggtgttttagttgtaataattgctatcacaatggcctatgtgaatgtatt
cctctcacacccagacacccagacaccagaccaatgtctaaaggaaacactacatacaca
tacccactgatggactgaaaggggcttgcagaacattcaagcttttctctgaaaaccact
gggtatatgggaaacgatttcagacaaaggatacagaggtcacccaataaaggaagtgaa
GGGCTTTCTAGTGGGCTCAG
Primer
(+)AGCTGAGTGAAGGTTCAGGC
(+)CTGAGCCCACTAGAAAGCCC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.