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Mouse element [ mm1213 ]


Position: chr1:194,648,549-194,650,114 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Hhat - 1700065J18Rik

Timepoints:
e11.5
e14.5

While negative at E11.5, this element showed reproducible craniofacial staining at E14.5.

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
tcagACCCAGAGAGACCCCTTTGTtagctaactactcaaagttactttcaatctctatct
acttggactgagttctgcaggaccatatctgttcatgtgattagggccagttccaaccag
gggacacactgggagaagtaaaaggtctcagggtaactatgctgtcagacttttcttccg
ctctggacttttctccaactggtctgaattagtgaggtctaactgcttctatttaaagaa
aaaagcaacagaatctctagggtgtgccttcaaggacattgccaacagacacacatacac
acaatcagctccatcagccacagagtctgccctcgggacacggacacacagtgacacata
ctgtgaagcagggaaggaaacgacagaaattgggcatccattcaaacatcgtgattctca
gagatggaagggctcagtgggaggggtggggccagggctaagaaagtgctccaagcacaa
cagcaaaggtctccccagaagagtctgggtttcctctggttctatttggctgggggacgg
cactcatggggtgtggcggccagctcctcttcccctgcacagtaaccccattgttaagag
actgcggacaatttatggaaagaggtggaatgcttatgtaactgactccactttagacaa
gacgtttgaaaggagggaaaaatgacgagtggaaggaagccagtccaaacagggtttttc
ttcctttctggacacagatgttggaaaaatcaggggagagggggagggaggaagaggaaa
aaaagacaggggtgagatagccagtgtccaaactggccaaagacagcctacctagatccc
gtctgtggctgggggcagagactccatatttggaagctgctgttttaattaaataggtca
gcaccatccgagcagctctggtgtggggtctggaactcattaatttaacatgggtagggt
gcggttggccgtgggggagtgggaccccctggtgagtggaggactggggggcctgggagg
aggggctgtcttgactgctttccccaaagccaggcctcaggcagctggagctgccagaga
gggcaggccacagatggagagctttgcttcattaagcatgagtctcactctgcagcctgg
aggcctggaaacatcaggactgcttgctttgagggggggggaggggaggagcaggggcga
atttcaccgatgcccaaagcccatcttggggctaattagaacaagcctcttacctctgct
ttcccttgaagctctggagccatggctggatacaaggccacaaagagcaaaagaaatccg
ggtccttcagatcacaggagccctgttcctgtgagtctcacatgatgggggaagtctttc
tgcccttgggaacccttgcttgatggggtgatccaaccttgcccttagagacctctagta
gatagctcatggctctgcagggagaggtagggctgtcaaaacagtcatcaaattcatata
aagctagcctgaaaactagcactgttgagtttcctgctgtgacaacAGAGGAAGCAGTCT
GGGACA
Primer
(+)caccacccagagagacccctttgt
(+)TGTCCCAGACTGCTTCCTCT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.