Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1196 ]


Position: chr2:59,161,996-59,164,461 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LINC01122(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGGGACAGAGGTTTTAAGTGGTgaaacagtaaatggtagaaagagtaaggtggaagatct
acagataatataacaaattggtgaaggatgattagtagcatgttttctgaataatcaaat
gaatcaaggctatcaggaaattctgtcgctcatgacatccattgggaggtgtgcccagaa
acagccaacaaaaggtagcatagtacataggaaaagatgatccttggaatctcgttatta
aaaagtggctcaaggtcagtttcccagcacattagcagagtgcatgttttctgaatgagc
taactaattttactctaaaggctttctctaaattctaattggagagtctttaaatcttca
aacatgaaaatgctggagaagagattcaattatatgtgaattgaaaataggaatagatat
gcttgaccagtatgtttttcttttcccattagaactaacggaaaaacatccagcctactc
caatgggcttgctgtccatttgctggatttatgtcagatggggaattactcagaatccaa
gatactgaaaaagcaacttgggtcaaaactgtcaattaaatggagaaattatgtacaaaa
ttaggatttcagagacccagatcttttggcagatagctaggtcctgacgccctttgaaat
cggaatatagtacaatgaccctctggggtaaaccttcccattaaatttgcaattcttcaa
tgtttgatactgtccagggagcaaatgaattaagactttcttttgtaaaatatatttttt
atttctacctggcctaaattctgattcctgcttctctgtggactgcaaatggaaaggttc
atgtcctatggcaagtgccatctgtaacttatgcttctgaaaatttaaaatggctatagt
ttattgttttgtcactatgtgttacatctacagattgtttaaatgacaaaaggaaaaaag
ggctctgtatgtatgcaaaagaacatgtaattagatgcaaataagcaataaggcaaagaa
aagacatttagcttttgcttgtgtaatgtgatataggttttgttatatacatatcatatt
tatttatcatatagcaactggatgcacagactttaaaaccacttgaatattagattttgc
ataattgggaggctgccgtcaccagtccatagcacaaagtcaaaaggcattttaggaatt
gcttacaatgaattgtaggtcatttgaaataaatttgtaggaagcctattaaatctcttt
ctatctctcctctctctctctttcttttttcgctacaaaacaccctaaagatcatttctc
taatgttttggtctgtcaaatctgtataaacaagtataaatgttaaaaaagtaaagaata
ctaatcaagagacacaagacatacactgcctaataaatcttgccttcaatttatttgtct
agtactacaaaggcaaaggagatatcaattaatataggcaaagaggacccataatttata
attaactggcaagtggtttgtaacaaacagcagcaccgagtctaatagccggtagaaaaa
taactagtgttgatttgtccctcggcaaattaatagagtgcttatcaatgacagggttac
ataaaactgctaaataaataatcatcagtgagttcgagtgaagcagatctttaacaagct
taatctgaacctcttgacatctgtagactatgaagagattaaatggtaagaaagagaaga
tacagtgtgcacattgtaagcctgctcagtaagtgtacaagatcatgttcttatgtaatg
agaaataaagaaacatttttattgcaaaattacattgaaaaatgattttcattataatta
gagtgaaaattataaaagatatatcaaggaaatgctgaactggaattcaccagatgagaa
tttcactacatctcttaacaatgaaaacacatcattttagtcacttttgatatatttttg
ctcgtttgcttcacttttgtttgatatatttttgctcgtttgcttcacttttgttactca
cctttgtacacgccacatgttccaactcatatgtcaccaccactacatccgtgagcttgt
ttttggttattatggttcctctatagaagaaaattaatcaaggttctatatttaaatgga
catttccaccctgccttcccacctaccctccccctaggcatatatatggaattctcagtt
tttttgttgcagagcattttattactcctggtttggactgtgcatcatttgcattgctgg
gaattaatagacctgtataatacctcaggtcttgtcttttctataagaaaatatttttaa
attaccatcttttgtaggcatattaacatcatgataccacttgggttttcagcactagtg
aactaaaaaatgcctgtttaagattgatatagatacagatataTAGTTGGAGCTTCTCAC
AAGTGG
Primer
(+)GGGGACAGAGGTTTTAAGTGGT
(+)CCACTTGTGAGAAGCTCCAACTA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.