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Mouse element [ mm1180 ]


Position: chr13:15,537,265-15,538,555 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
aAtaAGGCTAAAGTTTTGGTATTGGgttttcttttctttctttttctttttctttttctt
tctttttttttttttttttggcaaaatgtttcaaaaagaattgagcttttatatcagttt
tatattgctatcttaatacattttactttttttttcagctatagttgtacataaagaaaa
tataccattttttttttcattgagcctattcagatacagtaaacctgacccaacttccct
agtttgctttcttttgctgttaataaagttaatgatccaagcaagttggggaggaaaggg
tttaatccatcactgaaggaagccaaggcaggaactcaagcaggacagtaacaaggaggc
aggaacaatggccacagagagactgactcccctatgatttgcccagcctgctgttttaca
taagccaggatgtcttgcccggtgcggcactatccagagagccagactctcctctaacaa
ttagcaatctagaaaataccccacagagttgcctacaggcactctgatgaaggctgttta
tttactgagttttctcttcccatataactctatcttgggtcacgttgactgaatactaac
caggacacctccatattccagggatcattttcggtctgggttccaatgagaacagggctg
ggaatctcctttgtctcacactttatttgaagaagtaagcaagtatgcgcatgtgagcca
cggctccatgcagtgcaccggacaacttgcagtcactttggaacacactgtcttctctct
tcctgcttcctctgtgtgacagctaagagtggacgctctgacatggaatgcttgctatta
actccagtttaccacttaaacgtgtgacactaaacaggcccccaggctctccttttctca
tataaaaggggattgtgacaggaaccagcccataattgaaacaaggtgtggaaacacctg
caagcgatgcttggcgtacagtaggtgatctgaaatgtcagtttgtgtggcttctcattc
cccttttccttctcgatgttccacccattctttgcttttgcctaatttagtaccactccc
agtgactgttccatcattcttttctttcctgtccaccacacctagaccagaaacccttta
agatcacagagagctcagtactaactgcatcttagcacttactacagaacatggtcattt
tcattttctggtctgtgttcttccttatcttcttggagcaagctccttaagaacagataa
cattctattggTCCATGAATTCCAGCTCCCA
Primer
(+)caccAGGCTAAAGTTTTGGTATTGG
(+)TGGGAGCTGGAATTCATGGA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.