Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1171 ]


Position: chr15:43,538,950-43,542,522 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Ttc35 - Tmem74

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CttaTCCTTGTGGGATTTCCTCAGgaaaaagtcaatggtctcagacttttcaatgagcag
ggagaagggggcagatctcctggaactctgttcccttgcccttgctgagaggctcagcat
ggtgacatatcctctccttgatcctcaccttgtcctcatgagtctcttgtctctttgaac
ctctggctatgtgtgctttgtccatcacttagtgtttgtgtggagcagaagattattgac
atacttgattgctgcattgaaactggtttcaatatacttgttaagataggaaatcgctta
tcagtgccacagtactgaaaccattgacacttctaaggggtttgaatttcaccagtttgt
ttttgaaaacttaatattccttttatcctcactagattgctatggaaaggacttcaataa
gtggaattctatttccttaggtatgccattgtttaattcagcttcccttagtgtacatct
tttataaaaatgacactccttgttattattcattcttggaatgagtatttgtagagtcca
tccctcttcccaccaactccatctcagccttatactttctcctcttgaaagctcacatct
ggtacatctcctcctagtgctgagatgaatgcagtcatctgactcattttatgacactag
tgattttcctgcagagggataactgttgattaaatattttccactctctccacattttct
ggtcctgaagctcttgtttccctgacttaaagcaaaaaatattgcttggttaaggcacca
tgctctatttcaaaccagttcaccactgaattttggctattggaatatcacttaaaagac
aaacttccaatgtttgaatattattcacatgtcaaaaatgagtcaggcaccttgttagtt
atgtgacgattttacaaggcagcttttaaattaggatttttgttaccatacttttttaga
aattacttttatttcttttagaatataattggataattttccccctttcctttccttcct
ccaaatcctcccacaaatctctccttcctctctttcaaactcacagcttcttttctcgct
tgtcacatgaatatatatatatatatatatatatatatatatatatatatatatatttct
aaaagcatgagtaaacctgatcagtctgtatgctacttgtaggtattttactatactctt
tgtagacatgtgatttatacagtcatttctatacattatcaattataccgtgttctattt
ttatatccacgtataaatacataaaaataaatttgagttatttgtaacatttgtatttcc
cacctttagaaactatgtctgttagttgttgtctaaataatagtccttggtagaactcag
agtcagtccaccatttcaagatacatccccaagtaagcaaaggactgaggcataaataac
actcactggtttttttttttctgttctactactgttattggcaattctctagctactggt
tatatgagacaagttgatggcaatgattattgccattatagtgattaaggaaccaaagct
gagccaacttcaatgagttagtcattgtcaaaagatccactcatagtataaacaggaaaa
taaggagcttttcaaatatacataattgggttttatttagtaataccatatatggcacat
atatatcatatatggcacatatatatcatacatgtcacatataccatatatgatatatat
caaaaagttttcttcttatcaaagcaaaagaaatttgtgtgtttgtataagatcaccact
ttaaaaacagcaacaagaaagatatgaatgtatgaaagtgacttatagtgaggaggaggg
gttatggagcaggaaggggacaagagccgctagcttgggtgacagtaatcatagtgcact
gcatccttgtatgaaactgtcagagaacaaattcagcaaaaacattttaaaatatttggg
tataaatatggacattttaggtcagtttatgagtttgcccgatcctccaatgcttcacca
tcccatttggtctaatgcacttgtagatcacactcggttaccagtctctgctgttaatct
actataggtctggagtcttgttagttatgtgccattctggagcacatagggttttgatga
tctatggaaccagggtcctgtctccttatacaaattgtagaattttcttctgaagtctta
gtacctgttttggtgactacaacatagagcacagggtcattgaccagggaatttatagat
tccttcctctctagttcagaccacatttcagatggtaaacaacattgttatttatttact
tattttaccttttccacctagagatcctgaacctcacatattgtatcattttctcattct
gcttcccactttactaaagccactaggcttttctgtttttaaacaaaaggttgctcatct
gaatgagacaaaatgaatttaaggaggacacatccaaattacctgatcaaacacattact
acagaaaggtaaccatcattggcattttagtatttcaaaggtttaccaagctccaagtcg
ttctctctttcatttgagctgaaatacagaggaaatgtggttggtgatatttctagtttg
cctaagaagtaaactgcctgttctccagtccttggtaataagtaaagacctgaggaagct
gatgagattctgatttagaactttaatactaatggttatttcccaccttcaataaaattc
aaatttagttctctaaaatcacaggatagcacactcagaggaaatcctacttatatgtat
ttctagtggcactccaacaaagatagccacaaatcagacaaaagcaactatttttgtcaa
agtgaaaaaacagctttggtgactgggagatggctcagcaggtagaaggggccctgatga
cccaagtgtggtcccagagcccatagtgaagggacagaaggggactcctaagcccactcc
caaagtgtctaacctgcacataaccttcttagcttatgtgtgtgcacccatgcacttatg
cgtgtatacaaacaataagtacagtttttaaaaatggtgtactctttagcagaaatgagc
aatgttacttacttcccttcttcacattagtttttcttgtacacaggaaaatcctgagta
taagtggttaacttgaattgagacaaattatttggttcatcatcaaaagtcctttcattg
ctccatgttaaaaacaaaaagcaaaaaaaaaaaaaaaaaaaaaaccaaaaaacaaaaaac
aaacaaacaaaaaaaccacaaaagcaaaacaaacaaaaaacaagacaaaaacaaaacaaa
aaaaatggatatttttgctgtgatgtgaagaatcaaacattatagacaaattgttgctgt
attcagcatttgttttagcagatggtactgacccagaagcatcctttgtttagagagggt
tatatccagcaaagttttggattgaatgaagtatttcagtttggtccagttccaatcact
gcatagacaatacATGAGGGCCTTGGGTTAGAT
Primer
(+)caccTCCTTGTGGGATTTCCTCAG
(+)ATCTAACCCAAGGCCCTCAT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.