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Human element [ hs117 ]


Position: chrX:24,864,231-24,865,733 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: SCARNA23 - ARX

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCATGAATTAACAGGACTGACTAAAtatgatataacaaatatttgtttaagtttatctga
gaagcaaactgtatcacatcataatattttaataaatattggctcctttatgggagagga
gaggctttttgctcctcatctgtagcaatgattgtattccctgaattctagtttcctata
acatttaaactttgatatacatagaaatacagaaagcactgagccaggatattttaagta
atatattaatttctttaggaagaagataactctgtgctttgtcttgagatttgatgaagt
gttgaaagacttcgaggtagcacagaaagccttatttctaagttgatttcatgccctggt
ccttgttggttcctttgtataaagttaaaattgaactggtattttttgaaaatcataaaa
aggcagcttaaagacaataactctaagcttttagggttgtttttgaaagattccgtttta
cagtgaaaaattgatatgtgttccccctccccttaaattctgctccagaagagcaaatag
acatacacacacaaaagggagagaaacactagctaatctaaattgggaaatgaagagggc
tttttttaagcatgaaaatttcatcatcttgtcagctggcagaatgcctgctgtgtggat
tcacaaaggctaagaattacactttcatgaaattttcctcactaactgccctggttaatt
tgaaagataacccactgttctaattcattcctcaattgggcggtgcaggttttatctttg
atctgacaaagcatttgtgttaatcgttttggccctccactagacactcttgggattgtg
cttttacaataaatgtgtctgtgatagctctttagtctattatacttacaatagatccat
agaactggtaattaattctccactgctttggaaatgggaagaataggtgtagctctgtca
agtgctgctgggaagtttgtttagctggttcatttttgaagtgttcccctcagccatcca
agaagcagccacagaagagagtctgagattgagaagctggcctatcctgatgacttgctg
ataaatgggaaatgtgacccctcttggtacctgggaggaggatattgggtcatttacatt
catctcaagtactgttctttttaaagtatattaaactctcattttaatacttaaagagcc
atttgcctctaacggtggagcctctagaagatgcaatcgtaatagtcaactcaaatacgt
tcctaaattttcactgatggcttatgcaggttttagagtattctgattgggtaaagtgtg
ttccccaccagccttctagtgtttctagccacttgtacattatatgagtactttactatg
atttttaaacattgcgatattgctggccctagatggggctggccctccatctcaaagaac
acatgaacagcttgttggtaccatgcatatgataacctctGATAGTTGCTAGGGCCAGAA
ATT
Primer
(+)TCATGAATTAACAGGACTGACTAAA
(+)AATTTCTGGCCCTAGCAACTATC


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