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Human element [ hs116 ]


Position: chrX:24,822,603-24,824,623 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: SCARNA23 - ARX

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCATCGGTAATGGAAGAATCCTAaagccattgagatttcagttgtcattctctttttgca
ttatttgtttagaatttcaccttactcaacattttcttaacttgtaggattttctttgtg
tttaatatctgcatcatacaccaaagtgggtttcttgttaataagtaatactatagtaga
catgttttcggaataggaccttgaaactttttttttaagctgtggaaagctggtgttttc
tctctattgtttagtattaataaatactcttttagtctgtaatagcatctaaaaacattt
cataacctttggatgcattgtgatacaacagtattctattttaacaagatacaaagactc
aggtgttatcctgaacttattaggagaacctacaaatacacatcttagtagtagttggtc
ttaggttgttgctgttgttaaccttggcacacacaaaaaacatctttctgcttagtaaac
catatcgtgggtatattcatgaacacattattttctttagaaaacaatttttgatacaca
tctaaatttcctttctagttcccactacccttttccagctttcagaagctcagactgggg
ttaaaattccttttcgtattattttaattattgctctccccacctccacccctttcctgt
ttccccctcctcttttcccctaacggcactgttctgcaaagcctgcaatgattgatatga
tggcagtgctgtcattctttttaaccaaaaaaaagtcatttttgttctagttattttaat
agagtcccattaaagatgtattgctgactgaaatatcggcgtgaagggctctcactgagc
tgagcccaggaattaagaagtcaggaaatcggctgctgcattgcaagagagccttgtgtg
acaccgagtctcctgattggggagatcattactgctattatgactcgacttgcgtaggaa
ttttaaattccatctgaatgtcagtaataaccctcttagcaaattatcctgaataaaatc
acgaaggcattttatataataggtgttgaattactggatagatttgctaattaaatactc
tttgttctgctgcagttgacattacagggtaagatcttgaacaattattctcaacagctg
tactttgttaagggaaaaattaaccacaaagtttatttttttatacttgaagttggcaga
tttttgaaatgtgcttgaaaaaattccatcatccaattggtaatgagtagataaatatgc
aggtgttgctgtgaaatcagataactgcagactgccttattaatgaatttagcaagcctt
tatagccctgttttctagccgttagcacttacaaaatgattttctgtcagaatgggcagc
tttaatattacacttgtcacttcaaagtgaacttatgaatggtcatcttgtaatcattgt
accttgtgtctagtagacctttctgggtacttgtggctatttttaaaatgtgtttcttca
atggggaaaatacctgtaatgtataagtgtttgattgttgacttctagaacatttatgtg
gtatgaggtttttttttttttttttttttttttttttttttttttttttttttttttttt
ttttgagaaggtagtgagacataatgaaaagaaagtgaaacataaagtccagcttctgga
tcaagcttttgggcaaaatctcagagcctaattttcctcatttgtcagttgggatttata
atactgtgtaccccttaggattattcacttagcattctataaatatttattaacagctcc
catgtaccaggccctctggtagatagtaagaatttggtagctccctgagtagataacatc
tgagccctccccagtgagcagtttgaattgagggctggacttgagggcagctttggagtg
tttctgctcattagcacttggataagcattggactagagaggtcactgtgatacccacca
tctagaactgcttagtgaAGAAACATGAGAGGTTAGGGGTC
Primer
(+)TCATCGGTAATGGAAGAATCCTA
(+)GACCCCTAACCTCTCATGTTTCT


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