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Human element [ hs1146 ]


Position: chr5:92,426,546-92,428,433 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: ARRDC3-AS1 - NR2F1-AS1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGGGGGAAAAGGCTAATAGGACcttcaaaccctctatctggaaatgtcgggaatctagac
tgtgtctaaggggcaaaggtcacaaaagaagaacaaagccaggaagctgaacctggtctt
gtatgtttggatcccatctcattcgtttttcccttcattttcagtctgtccaaaattagg
atgtttggtgttatggaggttcacctgggaaaaatcaggaggccgccgagtgtaactgtg
ggatggcatcacagtaagcaagaagcttaaaatctaatccattaccagggaattgaatcc
agggaacatggcttcattaaagactacgactttataaataactacacataaatagaccgc
tttgccttagagaataatatatttcaaaattattatctacttaaaatattttacctaaaa
gaattcacaattagctttcaatatttaaacagtacattagaaatggaatgattataaata
tcagaaacaaaagccacttcattacagtatgaacatatgctaacataccacatactgctt
ttgaatttaataataatatagtttatctttttttaactgacataagggttttgataatag
ctaatataaatatatgaaatgtcaaatttagaagatagtgcttaaacatttgtctcttag
agagtattgttaaacttaacttttattaactctgagaatcaaagagaaatatggtgatgc
tagtgaacgtttgaaaatcttttattttatcacttttaatgcatgtttaatatttaacat
tcatcttattacagtcaggaattgtgaaatgcttgtgctgtttctaaacagttttaaagt
tcaatgcacagtcacaattcagaggggagatttcacacatttatggaaaataagccattt
ttgcagtaaagttgcaaagtgtgaaagaattcttgttttatctgccttacttatcatgtt
tatgaattattttgcctggaagtaaattgacaagttgtcaatgaacaatagaaagtgccc
cagctaggcttttcacaggttcagatgcctttgggcaaaagggctaaatctgtagttgca
atctagcatatggagcactgaaaaaagtggcaacagggtgagagacattccctgcaaaat
gcatgcggttgttgctctctaaccaatctgcttggaccactgtacattatgaattcaggt
accatcgtcttgccatacaggaataggattccttgcctccatataataatttgtttctgt
tttatcctagtttactttggtctactttgtcattttgaactattttaattctccaaatga
ttattattaaatattcatctttagtaataaaaagccatttccctattctaggtgactgtc
tattggaaacttcccacagaatcccataggaaggaaaacaatctcagagacccttttttc
agtgggtaagggtagaccttgacttccgcctttaaccaccacattttaggattacctggc
tataacatttcatgtccttttctcccatctcatgtttttcacaatgctattttgagacta
ttttatgataactcatacagctgaataaattactaaacagctaagtgggctttcagtaga
tggcactctttgttctgaatcagcccaatattgttttgccacttcactgaaaggccagct
gttctttgaagctcctgccttccagatatgccactctctaagacacagggatgtggttta
gggtaaaagttatggctgggatttctaacccaagaaacaagaaggacacaaaagacagcc
tcatgaataagagttcattaggaaaaaaaaaaaagctgaagtttgaatatgagaaaagcc
aagtccGGTGTCAGTTATGGATGTGGTT
Primer
(+)AGGGGGAAAAGGCTAATAGGAC
(+)AACCACATCCATAACTGACACC


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