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Mouse element [ mm112 ]


Position: chr1:135,445,890-135,447,463 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Sox13 - Snrpe

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAAACCCTGGCTGCAGATACttatgaaataaagagacttattttaactgatgcttctgta
gatttcaattcaagattgaacagctccattgctctgggcaaggggtggaaatcctatatt
tgggacaaactgcttttggcatgaaccaggacacagagagaaagacagtcctgcaatctc
cttccagagtggactcccagtaaccaaaaggtctcctggaaggctccacctcctaaaagt
ccacagcacttccaaatagcattgcactgggcaagcctttgctacgtgattgactgggag
acatcagaaagcctgttttatgccaacatttagacagtatcagtaatcttctaatggttt
ctctttacatcctcacagagggagcaagcaggcactagtggaacaagaggaaaggggaga
agagctctaaaaagcccttcttgttgttccttgaaccaaagcatatttctatgcttatat
tttggctcgtcagttcttttttgacacagagagctgccccaatatcatatcttcagcgag
ctcctagttctacccaagcttactatatcttgtgaatgaagcagacggttatgaaggcaa
ggctggccatgtgttcagctctggtgtgttttgtggttcgaggaactggtatcaatcttg
ggctccctgctcttcaggaaagagatagagagtctgccgcagagtaggcagagcgggccc
catcctgcccagctgggcatccttcctgtagctgcctcccgtgcttgcttcctgccgtcc
tgactactcaccgaaatgcacaacagaaaccaacgctgatgatatctgctttcccagatc
tatgaggggcctcccagctgcggatgggtgacagtgacaattaaccttcaaggaggcctg
agcccaggtatggagcacacagcagcagcagccacctccggtcgccagcacacctgcgtc
ccacagatctgagatgctacgatttaccaaagtagaagaaccacatttaattgatattct
ttcccttctccaagggcctatcagtccttgagttttccttatcaaaagttcttttccaac
aagctacagattgtataaactgtaatgtattaacattacataatgtagcaatgggtgcta
caatcctgtttggaaatctcctagccaaacacctcccctggacactaaactctcccccca
tcccccgtgccaagttttcccccattttcacactaaactctcccccccccaacaagtttt
ccctcattagaaacgttaaactttatttatttatttaaagacagtgtctcaggtagtcca
gtctggcctcagactgtgtagttgggatgaccttaaagtcttagtcctcctgcctccacg
tcctgtgctggggttacaagtgtgaaccaccacgtccggtttatacagtgctgggattga
accagggccttgtgtatgctaggcaacagtccacccactgaattacatctttagtcctga
aatttatttgcttttgacaaaagcatcttaatcctattttgctacaattccTATTGTTCG
GTACTGGCACGGga
Primer
(+)GAAACCCTGGCTGCAGATAC
(+)CACCGTGCCAGTACCGAACAATA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.