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Human element [ hs1090 ]


Position: chr2:58,811,475-58,812,905 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LINC01122(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTTCCCAAGGCTCCTCCTATACtaatttaggaagaaagtgaagaaatgtgacttttattt
aaaaaaatggtctttttggcaaagcattaggtcttttcattcactaagccttaagtgtgt
aagggtgcaagtgagtgtgtttgagggacgaaaacatagtcacactcatacacactgtga
agcaggtttgactgttctaggtgaggaagaatattcagttcagaaaaatttaaactcata
ttagattgcatatatatatatatatatatatatatatgtatgtatgtgttttttttaatt
tatctcaaggaagaactccaagtaattgttgtcttggggagttcttaatttatgcactag
accatcatgctgattttaggtaggtatttattctgctattcaatcaaaaagcatagtttc
cataacaactgccacatcagatgaaacgtacagcttggcatttgaaatacaggacttctt
aggagatatgcttcctgacatattgtgttgaacttgtgttcctttcattctcttttaagc
tagcaagatctgtgtttctataaaggaccatcgcagttttgcataattattacaatccat
ctgcacatttccaggatttatattaaagtaattaaagccattttgtattagtgggtgctg
tgtggaagcggcttggatgcaggattctaaaagttcccacttgcctgcttgctgtgctgt
aatttggagaacagaatgttccgtaaatgaggtttgggaatactacattttttttctttc
ttttctttgcaaagttactttttttcctccagtggaaaatggaataaaaggttcacctag
ggactggaattaatgtagtccttctgcctagggttaaaaaagagcaaaatcacagctagc
aacattgtgcaaaccctaatatatttagctttttctatgaagaaataataagcctgtgtt
tctaaggcaactttcttccaaggagcagcaagcaatttaatttatattctcattttcccc
agctgtatttgttcaagataaatgagggctaatattattaaccccattttgtggatggga
tgattgaggcagacagataatgttgtagagagcagataataaggaagataatgttgtact
gggcagtgcggagacgcacctcggcaggagtaataactaatacctattatatcagaccca
ctgaaagaactgaaagtgcgatactgcatttgctgagaaaaatcgtgtaagttccatata
ctttcaaatggctagtttgggatagacttaccacttctggcttaggcatgaatccttggc
atctctgttgaggtttgcaaggctgtttgattcttagcattcaggatctgcttcacagga
atctgcgattcttctgggtaggccacaggAAAGCTCCGAGGAGACCATAGT
Primer
(+)TTTCCCAAGGCTCCTCCTATAC
(+)ACTATGGTCTCCTCGGAGCTTT


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