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Mouse element [ mm1082 ]


Position: chr1:188,422,844-188,425,846 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Lyplal1 - Tgfb2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ttCCTAATCCCCCTCTCCAAACttggttatcattaattttccaatatggttttcactaac
catcgtgcatctagacaacctcttcgttgaatctaattaagcttagaattgctactaact
aatcttaagaattatccctaattctctattctctcattccaagccaagagcacaataggg
tacaccacttggagctccagccattggttagtgttttcttttgaatgggactttagagtt
ctgcctattgggtttagggaaatactaacataatatgaagaactatccacaatctatgtc
cagtgggttccttaccctacacaaccctccccctataataaggctgtgcatttctgttga
gagggaagaggctggcaagcaggagtgagtcccttccagaggagtggatatacacggccc
acgggcagctcctctttgcttcgggaatctgccacaagctgagttcatttacatgccttc
catttcagcacagtgaacctctatctgcacacagcttatgagccagatgcatgggtctta
ctccattaactggaactatggtgctcagtgctgagagagttcatcgcaagccgaagctat
tggacttgccacagagggaagcagcagctgacagtcactggcacatccctccagcaccga
ctgtgttacctagccatctggagctcaagattaaggcaggtttgatgagagagctgtgac
ctgtggacctcctgagaaaatgacaatgagggggtacctgatatacacttcaggacataa
taacctgtggctggcgaaaaactctcccaaattgcatataatttacaatgtgtgtaattt
aagtaaataggtacttctcaaaaaattttttttctgttcatggtactctcatgttgtaaa
aacaaaacaaaacaaaacaaaacaaacaaacaaaaacaaaaacaaagctcggcctcttgt
tagttctttgtttcttcaagatttagagaacaaaataagaagtaaatggtgatactactc
aaaagtaacgtttattcacctttcacctggagagcccctgggtcatattttgagcaatat
acacatcatcttcattcaggcagagttgattcctgaatctatgaagagaaggtgaaggaa
gcatttctctaataagtcctaagaaaatgagcttagctgcatagaatggtgtggcacagc
ctcagaaaggcattgtttagatgggagcatcaccgtttgagccacagtggactaaagaag
gactcttcctcagggacctccagggttggattgacagagatgtaatttttaaaagtagag
tcagactccgataatcaatctctctctctctctctctctctctctctctctctctctctc
tctgtgtgtgtgtgtgtgtgtgtgtgtgtccatgcacatgtgcacatgcatcaagcatct
tcttcattcatttgccaccctgttgtttgagacagagtctcccactggacatagagctca
ctaattaactagactggctgactgacctgtaaaacccacagaccctctttctctgcatcc
ccagcactgacattacatttggcttttcacagggacactggagaccaagtttatgttctc
tagcttgtgcagtagcccctagaaccttctttccagtcttccaggagactttcagtctct
cagttcccagtggtgaccatggcctgcgagtcctatccttattgcataaatctctaaagt
cccagggacttctctagtgatttaacaaaaaggcaaataaaaaggtgcagccactctcaa
ggcaaaagtaaaaagtaacaacagtgacaagggtcactgcagagttgtcattgatgccaa
ctgcaagacaatctcagggttgcagttaaggtaaaggtaagcttggctttgggatctact
tcaaaatccaggagtccatctgatatagtcagctttactccctggagacatctaccacca
tggctctgggaagccagcctgcatgtcacatttcccttcggctgatgtacagagaggatg
acccccactgaccactgtgtatgtcccatctcatgccagtggggctgaggggaacagaga
gtgctaaaacaaaaggaaggctcatctcacagtggagtaacgagacctccacagtccatg
ggcagactcttagttctatcatccacactggagaggatgcttacagcagtcatgggtcaa
cgtgcaaaaccttccattcccatggcaaacagtattcgaaagaggagcaatgtacaatta
aggtttgttgggatttttattttcttttcacatgtggcaatatttatcttcaaagtttcc
cctctggctcccaggctcctttacgaagcagctggtcctctggggcctcattgtgacatg
actcgtgtgattcggtagcttatttgtccagtggtcgggtggaatttgtaaactgcatac
tattgttctagactgttttctctttagtaagaagccaccatgctttctccagcattcaag
actgggattcgaattagtggagcacttgagatatttctatcccgacttcgacttcctctg
ctcagtaatgacattaaacaaaacaaattatcgcaattaaacagagagatggcaatgggg
cctggaaagagaagtggactgggagattaagatgtgatccggcttcgttttccggaggag
agcttgttaacaaacgctcagatctaactactacaagctgtgagcatcttctaattagtc
ctggctgttctcgggaaaacaaagtaaaatatggagtctcttaaaacaggcctctttggc
taactttgtccctaaacagacattaataaatgctctcagttacttgtgacactttccttt
agtgatgaaatggctacagagctgccagacctattaaaacaaagcaaaactctaaaagca
atttatactctcatttctttcactaacaagaagttccttgtatGTTTCGCCTCCATTGTT
GTT
Primer
(+)caCCTAATCCCCCTCTCCAAAC
(+)AACAACAATGGAGGCGAAAC


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