Mouse element [ mm1079 ]Position: chr1:130,640,035-130,643,464 (UCSC browser) Source: Lawrence Berkeley National Laboratory Flanking genes: Cxcr4 - Thsd7b Timepoints: e11.5 This sequence did not show observable enhancer activities at E11.5 We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution. Fasta sequence actgAGGTTTGAGGCCAGAGGATTggctcctggctgctacattcatctcccttagcactc gggtggcttaccgggggaagcacatccctacattttaagttacctaaagacttttcaagg tctagcacctctccctattccagtcccacccaccagtctcacccacatccagcaggtaca gtcacactgtggctcttggagcagctcgtgccacttccctgggggttaccctgaagtgac cttagatctcatacggaagtaactctcagtgagtctgcatctcagagtgtgagccaagtc ctcaggtgatagaccaggccctccgagggccctgttgcctctctggcttcaccctacgtc ttaggattttattgctgtgaaaagacaccatgaccatggcaattcttctaaaggcaaatg tttacttgggactggcttacagttccagaagcttagttcattattgtcatggtgggaaac atggccgagtgcaggcagacatggtgctggagcaggagctgagagttctacatcttgatc tgtagccagcagacagtgttgcacactgggtggagcttgagcatacaagacctcaaagtc cactcccatagtgacacacgtccttcaacaaggccacacccatgccaacaaagccactcc cccatggccaagtattcaaacacatgaatctatgggggctatacctagtcaaaccaccac agcccctgccctccatactaactgatggattctatttgcttcctagacacagtggattga acatcagacatgtggagagtcttggttctgagggttcagaattagacaccaaggtgctgg cagaggagagcctttcttaggtctctttccagcacacagtgagtgactgtgccatacttt agctggtggctgtgccatcacagtctctgtctgttgtcatgtagcctttccctggtggct gtgccatcacagtctctgtctgttgtcatgtagcctttcccctgtgtgttcccacgctgg ctcttcctgtcaggattaccagctatagtggttaccgtcactgtacaatggttacatagc tgtgaccaaacacctggcagaagcaactaagaaggaagggtttattttggcttatagttt gagagaacggtccaccagagtggagttgtcatggcagcaggaatgggaagcggcagacca caggcaccttcagtcagggagcagagggtgttgaaggtcggtgctcagctggctttctct gttattgtttctttggttgttgctttgttctgttttcagtgttgggctccagcctagaga atggtggcacccacagtagaggtgggtctttacgcttcaatgaatcccatcacaactatg tccagaggttttcaaggagcttgggatctcatcacagcagctacactgggttggttgcct ccagcagcaatgtcacctaaccctaaatagttacatgggtcataacacaatttccaaaaa agattcccttgatggggagatatgactttaaagtgttttctttagctgtaatgttagccc ctctttgattttgtttcagatacatagagagttttcagacttaggaaataaaaatctcag acacccagctaaactcaaacttccaatgaacacaaatgatccaaatgtttagataaacta tgttctaaaatgttccacaaaaatatgcaatatctgagacatgtttatgctataaaagta tttgatgtttatctgaaatttgactttaagtaggtatcctagttagggtttctattgctg tgatgaaacaccatgacagagaacaagttgggaaggaaagggtttatttggcttacactt ctacattgtagtccatcagtgaaggaagtcagggtagaagctgctgctgctgctgcttag tggcttgctccccttggcttgctcagcctgttttcttataagactcaggaccaccagcca taatgaattgggccctaccccatcaatcaccagttaagaaaatgctctacagacttgcct aaggcccagtttatggaggtattttgtcaagtgaggttcctttctctcagatgattagag tttgtatcaagtcgaggtaaagctagctcactaggcttccagcaacttttactctttgct tcttggacaagcaaatctgctcccatctcttgctcttgcatggccactgtttgcgcattc ttccctggcctgtttccgtttgtcactctctggttactttcttatatcttaattccatag atatgctttctagcttcctttcttgctttgaacttggctgtggaagggcttcttgtccat aaaggattttatatttttctctgtctttctgtctctgcctctgcctctgcctctccgccc cccccctctctctcacacacacatacacactgtcccttatcagcataataatatcaatag tcatattttgcctcatgactgcacgcactgtctgtcatcctcagaagaccttaagctggc tggtgtgacctgttctcactgtgtgaatatgcacacggaggtattgtatgcatggcagca tcaggtgctagtcctcaggtgcctctacctggcttgttttgagacagggtctctcattgg cctggactggttgatctggctcagctgactggccagggatccacctgagccctcctcccc agtgctgaggttaccactcaccaccacatagggagtttttaaaatgtggtttctgaggat caaactcaggtctaatgtgttcaaggcaattgctgtactgagctttctctgaaggtctca cacttgatgctttggtttctcttagtgtcactctagggcccagagaaaatattattgact caattttaaaacatacaaaaccattctttccctctagcgccagatgaagggcattgtggt gatgtttttgctttaatttccctccctccctccgtccctccgtccctccgtccctccctc cgttcctctctcattctctctctctctcattctctctctctctctctctctctctctctc tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc tctctctctctctctttctcacagcatgtgtgactgcagggccaacaaaggccagaaggg ggcgtttagattccttggagcaggagttacaggtggttgtaagctgctagtgtggacgct gggaactaaatctagatcttttgcaagaatacttaactgattcttgccaggacttcctca taccccaatccacaggcacactttccagcctcctctcttgcttttctttgctgtaggggg cttggagggcactcttaactgctgagtcatctcaccactgtgtgtcttacTTGCTTTCAA TCTGTTCCCCPrimer
|
For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.