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Mouse element [ mm1079 ]


Position: chr1:130,640,035-130,643,464 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cxcr4 - Thsd7b

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
actgAGGTTTGAGGCCAGAGGATTggctcctggctgctacattcatctcccttagcactc
gggtggcttaccgggggaagcacatccctacattttaagttacctaaagacttttcaagg
tctagcacctctccctattccagtcccacccaccagtctcacccacatccagcaggtaca
gtcacactgtggctcttggagcagctcgtgccacttccctgggggttaccctgaagtgac
cttagatctcatacggaagtaactctcagtgagtctgcatctcagagtgtgagccaagtc
ctcaggtgatagaccaggccctccgagggccctgttgcctctctggcttcaccctacgtc
ttaggattttattgctgtgaaaagacaccatgaccatggcaattcttctaaaggcaaatg
tttacttgggactggcttacagttccagaagcttagttcattattgtcatggtgggaaac
atggccgagtgcaggcagacatggtgctggagcaggagctgagagttctacatcttgatc
tgtagccagcagacagtgttgcacactgggtggagcttgagcatacaagacctcaaagtc
cactcccatagtgacacacgtccttcaacaaggccacacccatgccaacaaagccactcc
cccatggccaagtattcaaacacatgaatctatgggggctatacctagtcaaaccaccac
agcccctgccctccatactaactgatggattctatttgcttcctagacacagtggattga
acatcagacatgtggagagtcttggttctgagggttcagaattagacaccaaggtgctgg
cagaggagagcctttcttaggtctctttccagcacacagtgagtgactgtgccatacttt
agctggtggctgtgccatcacagtctctgtctgttgtcatgtagcctttccctggtggct
gtgccatcacagtctctgtctgttgtcatgtagcctttcccctgtgtgttcccacgctgg
ctcttcctgtcaggattaccagctatagtggttaccgtcactgtacaatggttacatagc
tgtgaccaaacacctggcagaagcaactaagaaggaagggtttattttggcttatagttt
gagagaacggtccaccagagtggagttgtcatggcagcaggaatgggaagcggcagacca
caggcaccttcagtcagggagcagagggtgttgaaggtcggtgctcagctggctttctct
gttattgtttctttggttgttgctttgttctgttttcagtgttgggctccagcctagaga
atggtggcacccacagtagaggtgggtctttacgcttcaatgaatcccatcacaactatg
tccagaggttttcaaggagcttgggatctcatcacagcagctacactgggttggttgcct
ccagcagcaatgtcacctaaccctaaatagttacatgggtcataacacaatttccaaaaa
agattcccttgatggggagatatgactttaaagtgttttctttagctgtaatgttagccc
ctctttgattttgtttcagatacatagagagttttcagacttaggaaataaaaatctcag
acacccagctaaactcaaacttccaatgaacacaaatgatccaaatgtttagataaacta
tgttctaaaatgttccacaaaaatatgcaatatctgagacatgtttatgctataaaagta
tttgatgtttatctgaaatttgactttaagtaggtatcctagttagggtttctattgctg
tgatgaaacaccatgacagagaacaagttgggaaggaaagggtttatttggcttacactt
ctacattgtagtccatcagtgaaggaagtcagggtagaagctgctgctgctgctgcttag
tggcttgctccccttggcttgctcagcctgttttcttataagactcaggaccaccagcca
taatgaattgggccctaccccatcaatcaccagttaagaaaatgctctacagacttgcct
aaggcccagtttatggaggtattttgtcaagtgaggttcctttctctcagatgattagag
tttgtatcaagtcgaggtaaagctagctcactaggcttccagcaacttttactctttgct
tcttggacaagcaaatctgctcccatctcttgctcttgcatggccactgtttgcgcattc
ttccctggcctgtttccgtttgtcactctctggttactttcttatatcttaattccatag
atatgctttctagcttcctttcttgctttgaacttggctgtggaagggcttcttgtccat
aaaggattttatatttttctctgtctttctgtctctgcctctgcctctgcctctccgccc
cccccctctctctcacacacacatacacactgtcccttatcagcataataatatcaatag
tcatattttgcctcatgactgcacgcactgtctgtcatcctcagaagaccttaagctggc
tggtgtgacctgttctcactgtgtgaatatgcacacggaggtattgtatgcatggcagca
tcaggtgctagtcctcaggtgcctctacctggcttgttttgagacagggtctctcattgg
cctggactggttgatctggctcagctgactggccagggatccacctgagccctcctcccc
agtgctgaggttaccactcaccaccacatagggagtttttaaaatgtggtttctgaggat
caaactcaggtctaatgtgttcaaggcaattgctgtactgagctttctctgaaggtctca
cacttgatgctttggtttctcttagtgtcactctagggcccagagaaaatattattgact
caattttaaaacatacaaaaccattctttccctctagcgccagatgaagggcattgtggt
gatgtttttgctttaatttccctccctccctccgtccctccgtccctccgtccctccctc
cgttcctctctcattctctctctctctcattctctctctctctctctctctctctctctc
tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc
tctctctctctctctttctcacagcatgtgtgactgcagggccaacaaaggccagaaggg
ggcgtttagattccttggagcaggagttacaggtggttgtaagctgctagtgtggacgct
gggaactaaatctagatcttttgcaagaatacttaactgattcttgccaggacttcctca
taccccaatccacaggcacactttccagcctcctctcttgcttttctttgctgtaggggg
cttggagggcactcttaactgctgagtcatctcaccactgtgtgtcttacTTGCTTTCAA
TCTGTTCCCC
Primer
(+)caccAGGTTTGAGGCCAGAGGATT
(+)GGGGAACAGATTGAAAGCAA


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