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Mouse element [ mm1077 ]


Position: chr13:72,460,162-72,463,189 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Irx1 - Gm20554

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ttCCCAGGGTCTGATGTGAAGTcaatgccatgactctcctgtagctgacgcactgggtgg
gcactacatggcaagctgggagcatgactctctacttttgtcttgtttgagcaattgtcc
tgatccccaacatggccacctgctaggcatgtcaatggtgaacatcaggattctttagga
ctcagagcatcctctggagcagtggttctcatccttcctaattttgtaactctttaatac
agtttctcgtgttgtagtaactgcccctaaccataaaattattcgttactactttataac
tgtaaatttctactgttaagactcataatcatgtacaaggtctctgatatgtgacccctg
tggtggtcacaactcacagattgagaactaatgctcaagagaattgagaaccctaggcta
ccatgccacatggtgtcctactcaaggaaagcttgcttcagcatctcttctgatgctctg
actcaaatctggaaactctgctcctgacacattgccgtctccaagcagttgatgtcactc
agaggcccatgcagaatgggtccctaacctgtattttaatttcaccttaattttctattt
ttaccaaactggttgtttcagttgtgtaataagaaagaagtgtgagttctgactctgtga
tagttacctttaatcatcaacttgacacaacctagagtctgggaaatggtaatcgaaaaa
ttgtctgtgtgcatgagggattgtcttgattgtcagttaaggtaggagtactcaccctaa
atgtgagcagcattatttcacaggctgggactcaccacattaagagtagggaaagctgac
tgagcgtaagcagcaagcaagggcatgtctattttctctacccgtaactgtcgatgtgat
gtaaccggttgctgcagatcctgcctgaaatgacggaccctgacctaaaattgtaagtca
aataaactcttcctcccctaaattgctatttttcagagtattttatatttgcagcagaaa
tgaggctcgaagagagagttaaatgccacatctacccagattttttttttcagcaaaaat
actttcagagaaaaatagacaaatgaataataaagacacaaaccattgttttccagtcgc
tatctctactttgctttttataaaagaaatcagcagcaagcaagaatggagagcctgagt
ttccaaccttgatgccttttctaatccagcaactccagagttcggtgtttaacagtcccc
ctccccccacaacttccaacctccccctctcccatctcgtcccatccttcgctgctattc
tttctcacagtgcagtacccggggctacttgcgaccctcagtgtccggacacacatctgg
cccatctggccccagacatggctgtcctgagaatcctgggtcccgacgccaggtcagaca
caatgtttcctgttcccatgctttgttttgttgctgttgctcctccgagagtctgtgtat
cacatccaagtatgcaaatattttggatttctgacaagctggggccctgtgtggtacaaa
tgagaacatcctctcacttcaagccctctgttcggcgtcagagacctgcagttgccagtg
atgaagcagaggctccacgctgagctcactaacacgggagaagcttccagaagctttaat
ttttccctaagaatctttttccattcttttaattgccattgtttagtctctcctggacaa
cttgagtggattccctgataaagtgcatgtttggcttttggcccagggagtcagataagg
ttcctgtgcaaagagaaaaaaaaaatcaaatgcctgcaagaatttcacagaaattgcttg
cttgaattacccaacagtttataacttacatgtgaacaaattacatctttcttttacatg
tgtatatttgaataaatactatttagctcatcctatgcagcaagtgctcactttataaat
gaatgcatgcttctaaatacgattcttttgtctatcaactgtttatccactatctattat
ttatgatctattcattatctatttatcaatcacgtgtctatcatctatctacagtctatc
aagcaatcatcctgctatcatccatttgcatacaggctaaattatattatgtgtgaaaga
aaaaaaggaaaaactcagccatcctgttacatagccagaatctcatgatgtaacctctgg
ctggccctgaacttgtcttattgaccaggctgactttaaactcacagatattctcctgcc
tccggctttcaagtgctgagattaaaggcatgggccaccacacctggcaagctttacaat
ttttaatcatattttattctaagttatataaattctctatatatgttggatgttaatcct
ttcttaatgacttacagataactcctcctgcttaagagacttaaggtttacagttgtctg
actgtccattttagggtgttttccctatgcttttgaagtcttatatgagttttatatagg
gggaaagattccgttcctatttaattttctgtttgtggcatgcccagtaccatttattga
aggggcagacatttccacaactcttctgatgtatcatgaagacaaacctgagtcctgtta
atgcctgtgcagacaaaagtcctagtttgttccaaagtccatgggaaatgaggcatcttg
tggtcaagcccagaacacatcattggagctgtccagccttcatgctactgaccataatgg
atgtgaatttagataagaaaatgacctggatggactcttaacttggtcagtacctgaagg
aagtcaacatttgagttctttgtactgtgttgtctaggtctatgatatagtggcacagtg
ggccactaactaggacacacaatcctagtctggggagtactaacaaagatatctgtgtcc
cccagtgggaagtggtactctctctcttttcatgggacatgtatagtatttgaggagaac
ggtctggcCAGGAAGCACCCAAAGCTAC
Primer
(+)caCCCAGGGTCTGATGTGAAGT
(+)GTAGCTTTGGGTGCTTCCTG


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