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Mouse element [ mm1076 ]


Position: chr3:149,160,298-149,163,362 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gm1653 - Eltd1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
gcCCCAGAAACTGCGATGAAATtagtctgtaatgctttcaacactctcgtggatcggttt
tccttctcagagaaacatatgaatggtgttaaaatgtgcttcctgctcgcacacaatatt
accccagaatgccagagaaacccgccgcttccttcagattccaatagatattatctttat
tgaacagcattgccaacttgaaaaggtcagccatccaggtcagggatatatattctttaa
gaagtttccagaactacctttaaaaactcagtcccaggaggatttctcaatgagaatcga
gggccttgcatttctttctttcaaaattctcttgccaatggtttttgtttcgttttgttt
tgttttggttggctggtttttaataaaacaagtaataggattcacaatagtctttctttc
tgtgtcattttcttttcattcttctaaattttaaaatttctgaatttagaaaaaaaaact
aaaaagaaattttaatttccttttaggatctaaaaggagagctgcacagtgctcctgtca
gaaactgggtgggaaactcactgatcaagaaagacaagaacgggctgactctacaaccac
atcccaagactcaagcagtcaatggagaataggcaaacctcattttaaaagtgtttcttt
gagctactcaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaacaaaaaaaaaaaccaaaaa
aacaaaacaacaacaacaaaaaaccaaaaaccaaaacccaaaaaacaaaaaaacctttaa
gcacatgcatgcacacacacagaggcacacacacagaggcacacacacagaggcacacac
acacacacacacacacacacacacacacaaatatctaaataaatgcaaaagaagaagaaa
tggcattgaaggaatatgggggttggctgagaaagctatttacatattaaattccgtgga
aagaagatacactgtattcaggctttgactttagtaactctcaggagttaaagaaaaaga
aaaagaaaaacacctgtaaactggagctcataattttctggataacaaggaagtgaagag
cggcttgtgcatacatttccccactcactctccacatcttgaagaggaaagtacttttca
gtatttatagaaatacaatttaaattgctttttcattatgacaccctcaaggcaaaatta
ttttattggaaaattgatttgctatcaaataaaatgaagataagagcttaaaagagctaa
agttatcatgtgacaactgcttgcctcgaagacattaccagatattcatatgtgtgtaca
catgaattctcatgcatataacatgtgcatatatattttaaattttctggtgtttattgt
tctcaagagtggatttttgtagccatggggaaaatgttaagttgacaactttcagacagc
ctgtctcctatacacatagaaattacataaattgttatggtgatcaaaaccagttgtcaa
aaaaaatttttataaaatacttccttccccctcttaaaaacggtctaattttctcctctc
tctttcagccctttatcttctccagtgtcccaccctgcaatatgtgtgaaatgttatcaa
aagctttctgatattaccataaattactgtgtaagcagagctactgcttatctgtcaagg
ggcttttttctttttctttagcaattttctccatttttatatgtgtgaaaggtttttttt
ttcttcctgcaattttttttttaaaccatggactgtacctaaaaggctttgactttcatt
ggggcaatactgtagatttctgttcataaaataatcttgtgacaccataaagggacaaga
aagacatttttccctattgtttctcttcaacaagaattttgcagacagtaatttctctat
agtgggacacattcccaatagagaagatgcattattgcatttagtatatattttactctt
ttgagtttcatttttgattgcatattttgcatgcagccagtctgtgattttttttgttat
ttattttaaaatctattgtcattatgtctcatccacgctacatagttaagtatagctctt
ttgataagaattacttcacagggctctattgtacctggatagtcataatttttgacaacc
atgcaattatcttttctattgtgagctttcttaaaaatatccagggttaattggatagag
cttctgttttggaaagaagagggaagatactctattctgggtcctgtaccctgagaaagc
ttgactatcagggctctgctgatgctgccccaggctgagacggactgaagtttctatttc
agacagcacaggaaaggagtcccataagagacccagacttcagaaatgattgtcaggaat
gatgacagaatatctggaaaccaaagaagaaaactgtgaagttccccaaccccaagttaa
aaaaaataaaccaccagtggctcttcagtggcttggaattttctgttcgcactcaatgat
ttagcctgatacatctctatttgtacctaaatgccacttcaggtgtatttttcaattgtt
gaaatattagacattcagtgctctcttatacagtacatgtatgttagcatctcaagaaaa
ttaaaccacaaaatagacaggcagtcactctgattttatccatattgatatttaggcaac
agtgttaaagacactcatgttaaccccaaagactatgcaggtcaactgtatcaagaggtt
ttccaaagcaacaacaacaacaacaacaacaacaacaacaacaacaggacaaccaataaa
acatttaagctgataagcttcattcctgaaaggtgagtttgttgttgttagttcttctca
gcccagctacaaagtagaaagacatctaatctctgaccacaggcacaacctcctgggaat
aagttaagagcaaatacgtttcttttgctcgccttgaacaggtattgtctgtagatagca
cagtgagcagcattgagcactgtgcagcttctgcctgcgatgaccTACCCCACCTTCTGT
TCCTG
Primer
(+)caCCCAGAAACTGCGATGAAAT
(+)CAGGAACAGAAGGTGGGGTA


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