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Mouse element [ mm1074 ]


Position: chr8:40,540,585-40,543,671 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gm6213 - Msr1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATCTGTGTGGGGTGGAAGAGgggagtgtcagggtaagtacgggtgtgtacaatgtgagag
tgtgtgttgacatcaatgtgtgagtgctggtacacataaaactcatgaagaggttggtgg
acaacttcagatgtctgtttttgtttcctctttgtttgagacaaagtgtgttgtccattg
ctgcgtatttcaggctatttggcccaatagcttcttggagtctttcgtcttgcctcaaat
ctccatataggaggcctgggattagatttctatttctttgccctgatttatgtgaggtct
ggggatttgagttcaggttctcatgctcagcattgttttcaatactgttagagtagccaa
aatacagatagttaatttcagtttagtaggggctctatatcataggatagtttgaaagtc
attttagagtcactaggaagaatttcttagtccttccatatcatccagttcaatttgatt
tctaacattcctgaaaaacatgcggattaaatattaaaatatggcctccactctcactcc
ttcccgtcggtgcggagctcggatccgagcagctctcagcccgccacagcttggatgtgt
gctcaggacaagtgctcagctcctccacttgagatcgatagccactacaccagcgccacg
ggcatcggggacttgaactagctgagtgcagccatccctgccacacgagtggaggtgtca
gtgtcctgcagtttggaagaactgacatgatcgataatactttgaatcctggttttgtaa
gaaaatttattctggattatttctttgaaaaaagagagaatgttcgttttgacttatatg
atgttgattcaaagagtccctacttgtccaaacatgactttctgggacaagtgctttgta
ctttgggggagattgttggttcacagggaagttgcctggaaaagccaatagtaggaattc
taggcaggaaatgtggaacaatcatactgacggcagaggagctaaactgctgcagggatg
ctgtgttgatgcagttctgtgcaaacacattggataagaaggatttctttgggaagtcag
atcctttccttgtattttatcaaagcaatgaggatggtagctttacaatttgtcacaaga
cagaagtggtcaaaaacactctaaatcctgtgtggcaagcgttcaagatctcagtgcgag
cattgtgcaacggggactatgacagaacaatcaaggtagaagtgtatgactgggaccgag
atgagagtcaggatttcattggagaattcacggtggcctatggaatggcactgaaggctg
taggagaaatcgttcaagattatgacagcgataagatgatcccagccctgggttttgatg
caaagctgcctccagatggaaggatatatcacgagtttgccttgaatggcaaccctcaga
atccttactgtgacagcattgaaggtgtcattgaagcttactatagaagtctgaagtctg
tccagttgtatgggccaaccaactttgctcccataataaaccacgtagcaagattcacat
cctctgtaaaagatggctcccagtactttgtgctcctcattgtgacggacggtgtcatct
cagatatggtgcaaactaaagaatccatagttgatgcctcaaagcttcccatgccaataa
aacagtaggtgtgggacctgcagaatttgatgcaatggttgaattgggtggagatgatgt
aagagtttcctccaaagggaaatatgctgaaagagacattgtacagtttgtgccattcag
ggattatattgacagaactggaaaccacatactcagcatggcgagactggccaaagatgt
cttagctgagattcccgagcagttcctctcctacatgagagccagaggaatcaagccatc
accggcatccccgccgtacacccctcctacacacgtgctgcagacgcaaatatgaccaca
cccagatgctgatgtccctcactcgtcagtcagaactgcgaagcctgtgctttgatcctg
gtgctctgctttgaaccagggaatgagacactttctcagtttggtttcagcagtcctgga
aaatgtgctttcttggatccaaaactaattctcttcctaaaccaaaactgtaaatagggt
tgttgcatgagcaacggggaaattgtttaagatgcttgacgcaaagtagagatgtcttct
ctaatttttgaatttttttttgtcgttgttctcgacagaatagtaaatttccaatgtatt
attgggaaaaagcacaagctacatttttaacacaaatgttgtccttgactgctacatata
taggccggcagtctctatgtcgatgtttacttgttactactttttaaatttcaatacctt
tatagctgttcttaagagtaagttttaaataatgaatccttttttttttctaaattgcaa
tatctataatcacaggagcaatatctctttgaatgactgtctggacattcatggtatgag
taaggaagggaagagaaggaattagagtctacttagtgattaatatctgtttgggccaac
agtgggagtttcaacttataaacagatgtggccctgtaatatgcattttttttcatggac
ttcgggtttaaatttagactgcagtcaatttatctttcaaatgccaactagaagcaatga
acaggcaaacatcgtgaactgttaatgcacagaatatactttgtataaaaaccaccatcc
ttataacactatgatttagtgtgtaaaaacaagagtatataactccaaaccatgtagcag
gtgtattgaactttgtatccagttatatcctgtctagatattttgattcaaagggatact
ggctctcttgcttgggatttatgttctcacccttccatcttgccttcaccggttgcacag
gctggagtctcttgtgaattctcagttcaatgtatacaaccctgtgacttagcacacaac
acgtttgtgaaataaactcatccctctgccccaacctgcctgtttgtgaaataacccatc
tcaCTACCTTGACCTGCCTGCTCacaa
Primer
(+)ATCTGTGTGGGGTGGAAGAG
(+)caccGAGCAGGCAGGTCAAGGTAG


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