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Mouse element [ mm1073 ]


Position: chr2:113,911,787-113,915,939 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: C130080G10Rik - Aqr

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAGGTGAGAAGGGTGAGAGCtgggaggtggaaagatgcaggacattgacacggaagctaa
gtttattgatgctggtgcctccgcaattggtgtggctggatcaggggcttggcaccggaa
cactgtttggtagcttgtatcaagtatgccaggaactggtctctcaagtagtagattttc
tctgccattctaggatttgccttgtctgaggccatgggctcttctgtttgatagccatcc
tctccatcttcttcaccatgagacactgtggggttaaccaggtatccctgctactttgat
tctatgccagtctcgatgctggcatatgctaagctttaccattagtcatattattttttt
aaaagacaaagtaaccaacaataccaaaaccaaaccaaagaagacaaaaagaaatgcaga
tgacaataccttgggatcaggccacaacaccaagaaggtggccttagcttttgagctttt
tatcagtccccgttacattacagtatcttttccatataggtacagtatactcttctctca
gtgatcaaatgttgattgtataagttagcctccaagtgctccaggaagagttaaccatag
caacttagaactgaaagagcccttaaaagtctgtgctggaaccaggaatagcagttcatg
tccttaaaaccagtatttgtcagaggcaagtgggtctgtgtaagttccaggccagcctaa
gatacacggggagaccttgtctccataacaacaaaccccaaaatggtctggttcaagttc
aaaataggcaggtcaggagatgagacctaaatctctgcttccaagaactgggcaagtcca
aagctcagaaattgtcccaccacctggcctgaggcaaggataatgggtcagcagaagttt
ccagacttccccagcaacagcttctagcccccatacctggtaatggaatgtccctaaaga
tggagcaagataaaggtcatctaccctggagtcccctaatgtgctgtaaatcaggcctgt
gaactcactttgttgtctatcttggtaatgggagacttcggcatgctggacttctttgtg
tttacatactatttgtgtccagggtatcattctttgggcaaatcatagacccttacaata
tgaaagaagaaaacatctcatttgggaggtggaagtaatgagaaacagcaagttgtccca
ttccaggaatgcagaagcagtttaatgagggagaaaagggtcattgaagacaaaggaggg
cttggggtggctctgggatgggcagggagaagctgaaagcctctgtgcttgggatgtaca
ctaagtattggtgacagctaacagaatggaatacacaagagagtctgggtcacaaaccag
aagcatgagaggcctttgagcagtcagagccctgtgactatcatcttaccaggaggaagc
cttgatgcagatgcctgcctcgcctccctcttggctggtggcagtcacagctgagtgagt
ggtgagtcagcactgggcagtcattcatcctttctgatgccaagtcatgtctcagacaat
caaggaggagaggctggggtttcttccccttcagaactcatgtagggtgaacccattatt
tgttttactaatgcagcagccaggtcttcagagtgctggatttacgtaacatcagtgttg
ctgtcaccagtggtggcagagagcagctaggggtcacctgggggagatgtgtcaggcgct
gtcacatctggaaatccactgaaaatgtgtctccagaagccaaaggagcacttttactta
tctaagaggcgagagtaagtcagctcactcaccaaacacgtcggtgacagcttagcatgg
attctatatcatttgttgtcacagtagtcacatttccacactcatagagctgacatgtgg
ttcttgcacaaaattatacacaacagtcactgtgtctagtctacacctttctgggaatga
tcacaatgtgagacgaggtctcagagtaggtgctgtgctcagtgattctgttacaaggct
gagtctattctttattggttgtgcaggccatggcatgtttctttacacttcaatgttgtc
atttgtgtaacaggtgctatcacaggatcatgaaattccggtgagaattgaatgtgatca
tctgtgtgaaacacaggccacagtatgcaatcctgcctaagagatcagcaaataccatcc
atgtcatcaccatgaccaccaccactaccatcatgtcatccactaccaatatcatcatag
cctatgtcatcatcacaccaccaccaccatcatcatcatcactttaaaccaccaccacca
tcatcattatcaccatcatcatcatctgtggtctttcttcactcaaattatacttgttcc
atgtctttctccttcctgacaccattctctaatactggtctgtaaaatattcatgtcaca
agcagatttggatattgttaggactaaaatgaaatattgtggtcagtattagtttttttt
ttttttgccttgaggacatttcaaaactcaacgggaaggcataaagacagtacatattta
tttcactgttctttgttcccagtgcaaggtttaatatgtcaggaacatgctaaattctgt
gttgtttgtttttgacaaataaagggtttataaaacttttccaattggcaaaccaaggta
gcactacttcttcatagaaggtggtttctattctgtttgaaacatgaatcagggcagcta
ctctagtgtggaattactctaatctaatgtggaggcaagagcatccggaagcatctaacc
acagtgccctgtggtgctgccttggtctggatgtgagcagcagggtgcacatggctttgc
cctgactgagtctcacatctggacatatgttgtctttagatcgacacttcagaaaaattc
attctatttggtttaaacagaagaggaaaataaagtagtgtcttagtcactgctctgttg
ctgtgaagagatgccatgattaaggcaacccttagaacagaaagcatttgactgggggct
tgcctaccgtgtcagaggtttagttcattgtcatcttcagaacatagtccaagaatggag
tcctttaacaattctgaatgcttatgaaaaattccaagaaaacaagatcttgtgatctca
gtttcttcaaaaacaaaaacttgttcttgggatgctctttcatgccccttctagatgtat
cgaacaggagtgattccactttagattacacattacccttggctattgttatttgtttat
atggctctatggaaaacatgtttttgccaattgtgttctgcccttgtgattgaacacctt
actcatgattcatcttaacccttgtggtataaattgccagatgctctgaataaagttggc
tattgcatgagatgctattaatatgtcttatttttaggccccactccctcaggtttatgc
cactaactagagtggtaaacagttagggtgaagagtacggcagccttcaggtagacactg
gagcagtagctgaaaggtacatcctgatccatacacagagagtaaaatgcttgggttggt
gtgggcttttgaaatcttaaaccccacctccagtaacatagttctttggataaagaccac
acctactccttctaattcagcggttctcaaccttcctaatgctacaactctttaatatag
ttcctcatgttgtggtgacctcacatgaagtgaaagggtcattcagttcctccccaaagg
gtcactacccacaggttgagaaatgcagctctaatcttaaataacgctctactcctatgt
cacatgtcccagaactagtgccaccaccacctcattcgtagaccttggtgtgtaggacac
tgcctccccctccctgacaccatgttctgtctggttttgctctgacatgatgccacttga
cattttgcattgcctactgggaccaactcttggcacttttcctggtcctcagtgatgcct
gcagtctgtccctgtacctaggaacaatcagctcattcagccttgtttgaggcctagggc
attgtccatgtgttgagcaacacagttccagagtggaaatggactttagtcTCTAGGTTG
TGGGTCCTTGGct
Primer
(+)CAGGTGAGAAGGGTGAGAGC
(+)caCCAAGGACCCACAACCTAGA


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