Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1071 ]


Position: chr4:52,102,282-52,105,401 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: C630028M04Rik - 2700081L22Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
aAaCAGAGGTGGCCAGTTCAAATcttccactagccacttaccaacacttcagattctgaa
gaggaattaaatgatttgtgactcttgagatgtattctaatacaaacatgaattaaatag
acattactaaataaattttactgtgttcaatgacatttttattatacttattcacacaca
ttaactgcatcatttaatgagttttatcataatgttaccatgaaagtatataccatgttc
tattctttcaatccctcccttctaatgcatgccttcagcttcctttccattcctagcagt
acctttcctactttcagattatctttttttaatttctcttcactttgtttttaattgttt
aatttaaacatatgaaagaagatatacccatctttttgtacctggcttatttcattacca
tgagactcaagttccataaatgttactgaaaatgtgttatatatgcatatatatatatac
acacatatatatatatacacacatttatatatacatatattaacctttgtaggctaataa
tactctactgtgtataagtagtatttttctttacttatttgcatattaatgaatacttag
gctgattctctatctgaactcttgtgagggatgctgagataagcatgggaatcttattat
actacatattctatgactcaaaactttcatgtcaactttgcactgtgttgagttgggcta
agcttcaattatgtggcagttattttaatcatgcttcctaacacatagagtagcatcttg
aaacacatcttgaaagctttcctcacaccctcattcataatcatggagttctatgtattt
gttgggttgaaatttcactcaagaaagtccagaaaaaaactgtcaggagacagacccaat
atctctaaaacacagaaaaggactgacctaaacttacttcccaacctactcatagcatat
tgtttatcattactggtgtctaaaatatttaattgcttaaatattttaatcacataaatt
tgtgactacacagctctgtgagatgtgtcaaaaatagatatatatgtacatgtacatgta
atagggatggccaatgaaatttcatgttacttgggtataattgatactttgagtgtcatg
ctgactatacactaaaacttctaaattattaataaaattatcatctcagaaatctggaaa
atgttatctgtagtccagacaatgtagatatgactttctgcttaaatttccctttgagac
aggggaaaatttgagatatgtgcccagattctgaggttacataagaatggcccatatcct
actaaagaatatgaaagctcagtgtggtctaaaagtatcattaagggacaaaacaatact
gaatataacaagacagaccatatcactagatctattggagagattcagagattctatact
taggtttttagcaaatacacaataagaaataaaagaacaagtttagatgatccagagaag
agatgactggacaccttaattgcaataccttgtaaattacacaagtgcatatgctcagta
cttcatactgtgacacagcagagcaaaactctgaattcacatattagctaaatattatca
gtgtgtataatctatacattttagtaaccttgatatccactgatagttttaaacacttcg
gaactgcaattataatcaaaacagcaaaacaaagggtggtttgggcaactcaaagttgtc
acatctttattatctgcgttataaaccccaggtttttcataaccatatttgctacctcat
agctataattaaaacacagcaagtacaatctatgttttatgtatttaataaaaaagacta
gcataacattgcacacctttatgccagccttgggaaatttaagcatgaaaactacaaatt
tgagaccaaatggattatgaagtgagatcaagaccttaagatccagtctccaaaggtaag
gaacaacaaataaatataaatgttctatgtaggaacaagcagagtgaacaggacaaggct
atcattgatgctttgtactcttcaagacaaccaacatatcacaaatacaaccccttcact
aatttcagcccaaacaactgaaataaattaaagaatttatgaggaatatgaatcccagaa
gttatttgtatacaagtgtaacctcctcttggcagtaaattgtaacctccattcttttag
taaggtcataccaatagagtcagtttggtatgccattatcagtgtacacacttgaaacat
tgaaaagacttgatctctatcaagtcagtacttgtagctcacattagtaaatgcatattt
tcactgtcttcaatgtggttcttattattaaaacttagtgttttataacttcccaaaatt
aagcatagattactagaaagaggttgctattttctaatagacaaatgtagttttcttaca
ttaaaagtacattccaaataaaagcaatttctgttagtgtgatatgatcagcccctacta
caagctccatgcttatctttttaacaattagtttgtttgaatcagaatcactcattcatt
ttcagcaacagacaagtgtatctggatagcagtcactgaacaaatgaagcaataactctt
tctatcctgttataatagcactcaaatccaccaatcaattatccagaaaaaaatatgtct
attcagagaaaattctgggtggtttgatattttactttttatgttttttttttttttttt
tttttgctagagaaaaaagtgacttagttttaagctgacagtgtccttacattaaatttt
gtgtttatgcaattgcattgccatccatgctgaaggaattgcccagagcttagaatttct
aaacaataaccactgtagattatgagataagagaaagtatcccactgtgataataaaaaa
caacaggagggtaaatcttagaaaactgaagaaagtgaaaaataaaatactagaagagat
aaaggtaattaaatttaagaagtgacatatttctttatgatattaaaattaatcttctga
tgaaatgtctcaaaagtatctattagtatagatggaggcaCCATAAACACTTGCACTGCA
Primer
(+)cacCAGAGGTGGCCAGTTCAAAT
(+)TGCAGTGCAAGTGTTTATGG


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.