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Mouse element [ mm1066 ]


Position: chr6:50,955,004-50,958,667 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: C530044C16Rik - Mir148a

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
aAttATCGCCTCACCATAACTTGGcctaagaaatatttataaaataccatagggcccatc
tgtcatccagccatttcctgggtggctgctattcccagtgacaaggaaacacctgagcaa
acccagagacttcaagccgagtgaactgaaagccacaggcttcagatcggttagatttgg
tccaatggttcactgttaatgcagtttagtatgtgtccttctcattcctccatgtaggta
gcaaaaagaaagcgaggacacattgtcatctggtaacatagtttatgctgaaagagtttg
gacaaatacatacacatgtaattgaataatatatgagtgtgaccactgccccaaaagaga
ttccttgtaaccctggatcctgaacacagactttatttcaatagctcacagaaaagaatg
tacgttgagttcacaggtaggctgtgagcagtttagaagttgatctggagggctataggt
tttgctttgttttgttttgttttgttttgttttaagctttgaagtctttcaaatattggg
cagatattgtacaaatgagcccccaagttccacagttggcaattccacacttgcatgaag
cagttttgcttgaattagtacctggaaacactacaacaattctggtgtttacaggctcca
ctcaagcaaagcagcagccgccacattcaagagggattagcaatcaaaaattgcaagcct
cccattgccacacaagctggcccgttcattttgtacagatcataaaatccaaaacacggc
ccagacccctgtccagaaattgttcacatcctaattttaaaaatagcttttatactcgat
ggttctcttttcaataaaacaacgatttgtttatagctacagtttaattaagagccttct
ctaggaggaagacctgcaaaccaggggccttttttttcttttcctttccttctccccccc
cccccccccgcacctcctcccaactcagcgttgtttgtttactgacttaattttccctga
agtaaaaatacactttgaaatgtaacatgtcattatgtaatttgtagtaacaaagtgcag
gcataacaacagcacatggggtggctctgctcacggcctccaggttggccaccccctccc
catctgattaacagcctgtataaacacacagccaaccagaaccctggccaggacacactt
tggtcagccataaaactgccagccaagcatggacatgagggctttcgtcagaaatcttaa
tttggggcaaatgatcaaaaccgagacaacatggccccaaccaggactggaaagggctaa
ccttttgttttcattaatccttctccaatacccaacccgggagcgatgacatcactgctg
aagctgagccgctcaataagatgtccctgaaacacagagcttcagtggcgacaccatcac
atagactcttaacgctctgaaggaaaggcaaggagagaaaaaggaagggtgtctagtgaa
ggggaaatcccacagtgtcagagttgtttgaaaagaccctattttgacatgccgaggagg
gattctctctgtgtgcgaggaaatcgaaaaggccttcagaccgcagaaataaatggagct
tgcacaaagaactgttttgttggcttctgcccgttattttcattgctcttagggaaaaaa
ttaatcccttcacatgatgggaaattcaaaatgtgatgtaaatcaagtatttagtaggaa
gcagttaattttatttagtctttaaaagaaagaaaggaggaaagaaaaaaaaataagctc
acaagatggcaaatttgttttctctggagccagccaatattttaggactcacttcttgac
acataataacggtctgagggcctggcctgaggtgtggcacctacacatatgtacaatgta
gcaagcatatcctcctcttgggactacacaccaccacaggcttcctattttttagaataa
tatgctggagctaatgaagctgatgaaaccagacataccaaacagccactggcctggcct
gcctccctgagagttccatcgtcctggaactgttggcttcatggcagtccctcacaggtc
ttccatggctccaggctagctccttgattttcaagttttgccctgtttgaaagagaaagg
ctgctggctgtttctgcctgccactcccctgcacccacccccacacccccagtacctata
gtatatctaaatgtgctcacagacatttatttttgtgttataagaacctcatgccttatt
gtatgtggctttgcctaaaccgtgcaagactgtacagtcacactgagatatgcctttggt
ttggtttctcaggctctacacaaaatgcataccaaatgttaggctgtggttctgcctatt
gccacatttctttttacagataaaggactaatgtagaaaggatcacagtaatttgcccac
aaacagctgaagttcaccccaaaataaccttatgcatgagcaaggcccttccctcttggg
tacctttctgcccttgtctcaaagtcttaggaccagtgctcaggtagaatgggactactc
catggtgactgtacttatgaggtgccctgggaccatcaggaggatgtcggccagggtatg
aaagctatgggtccttcaaacactcagtcaccacacatacctccaaagttctgttttcct
acttcagtgcccatggccacaccactgaaaaaatggcacctccttcctcagtaacaaaga
acgttcatgagcgacgggtgatatggaagtgcagaaagcagagctagtgaaggcttgtgc
agacctgtgttgtgacatgggcccaacctcttgaggactccaagaccaataggcccccag
tgatctggcaaagctattccccatgccagctagattcaagagggagctttcttcaggaat
ctgagtctgtgtgttaatggatcattgtgtgcagactaacaaaggcagcttcctcctcag
ggctgtttatagcctaagactgttcctcacaggcacctgccaccaagactaccctacccc
tctccctgtgcagcaccaaataaacacactgaggttccagactgtggtggtggaagttag
agcaccccactgtatcccagcttcactgtacatgagtctgtgtgtctttcctgtcttcgt
ccctctactatccctagcaaaggttctgggctccaagccttggactccatgggctctctt
attcatcatggatgggggaggccattatctactgattcaggtttctctgctcaaactttt
aaaaggaattttagatgacatttcttattaggtttacaaaatagtaggtttccatgaggc
ttttccatagacacttactattggctaactcttctgatcccccaactactatcccttgct
gctctgctgctaccatattggtatccacctcccttaaggcctacatgcacacgcacacac
acacacacacagagagagagagagagagagagagagagagagagagttcttgtagctttc
tgacccttacaggcactctaagttaaaaacactagtgtatctaagagcacatgaggggtt
tgtctgtccatctgggtcttgctcaccaaagtcagtatgatttgATTCCATTTACAGCAA
CCGC
Primer
(+)caccATCGCCTCACCATAACTTGG
(+)GCGGTTGCTGTAAATGGAAT


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