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Mouse element [ mm1065 ]


Position: chr18:76,947,961-76,952,470 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad2 - Skor2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAgCAACCCCAGGTAGACAGCATttcctgggaaagagtccagcactggaaatagctttgt
gaaatgcaggtggccagtgaggtcagcaggcaatgtgcccacgtgtacttcttactttcc
cctgggatcacaaaagccctttctttttccctgtgtctccttttcttcctggggcccaga
agtctcatctgtcccttccacccagcaattggctcccagcctcctttattgaccaaacaa
caaccaattggggaactagacttcagtatcagaacctcctcctacagtatggtatatcag
aaacatagacaaacacacttaacatctttccacaatgtcaccatttattgaataacaaca
aagtcacaaggtaagtctatttaattgaccacaacttgccaaatggtactgagttccttg
gtattcaaccaaggcaaacacatgttcttctattacaatcttaaccactaacatgaacac
tcaggtattaaacagtggaggcacatacatgtatgtgtgtaaagattatagaatggctaa
aaagggccaaagagcctacattcaagttcaagaagttttaaagtggtctgacggtggcag
ggggtggggctgagagaggtacttggaatggggtcagatcattaaacctgctggatgttg
gctgggaactgtagagtttgaactgagcttagaagctgcaaggtgcaagaggcatgggac
catgcaagctgtagatgtgaagaatgggactgagtttctataaatgaacaggcagacaga
tgacacaggcacaggcagcagagactcagctgagctgaagttcctgaaacagtgggttcc
ttggcttcaggctagatggtctgatgactgcagtcggtatggtaccactgccactgtgat
gctaggtgtccttctctttatcaggtacagagtggtgttggcattctctttggtgtggtt
tatctagtaatttcttacacctagcttccttgatatggtttccttgtgttcctacagtcc
tgattacctttgataggtgtgtgtgtgtgtgtgtgtgcatgtgtgcatgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtagggtggcaccttccatgctttaagaataagtcagt
gccacatgggtagtactggacaagtggtgctgttcacacacccaccaaggtacagagtca
tccccatcttcaaatgcagtcaaatggtgcttgtaaaatggaggctctcagagcaaggca
cagtctggaaaaccatggcttttacataatacggaataatttagatcatagcattaatca
aaaaaatcaagtgagacactgtccattatgatattaaagcaagtcacatggcccagtcaa
gaggacagggaaaatgtggggcaacaaagagggtggacaaacatgtgtgtgcacacatac
acacacacacatatatatatacacatatacacatacagatacacacacataaatatatat
acacacatacacacacatatacacacatatatacacatacatatatacatgcacacatat
atatacctacacacatctatatacacatacacacatctatatacacatacacacatctat
acacacatacacacacacttatttacacacacatacacacatatatacacacacacgcat
atatatacatacacacacatatataaacatacacacatatataaacaaacatacacacat
atatatacatacatatgcatgcacacacatacacatgcacacacacacacacacatccac
acacatatacgcacacacacatgtacacacacatccactatgaagcaatacagaaaaagg
accatataaggacctttcacctcaaaggaccatataagcattaagtgcagagatgtgtct
gagtctggtgtgggacatgagctggaggaaatgggtggattgcagcaaaggaagatgctg
gctgggccataaggagagtggaggcccatctgcctctggcagagaatgggcaatgaggct
ggaggcagaggtaggtagctagtcagccaatactcccttcctggggggggggggcttgtc
tttccttgatgaataaagaaattatgaactagaggcaagagagctcactcctgtggtatt
gtgtcttaaaaacaaatatcaaaacttacagctcccactcctttattgaagacttccaag
gtctgtgtagctttgggttctgtgttccccttctctaagcagtgggcatgtgaatgcatg
cacacatagacacacacacaggcctacacgcatgctcacatgcacacatgtatgcatgaa
tgtgtctgcacaatgtcacacaggcatccaaaagtctctgtccttcgtgcaggccctgga
gacatgggtgtctgtcttgactttcctggaagctccaggggctgggactgtgctttgctg
gctctgatagctggagctctgtaaacatgcagaagtcgtaaccaatggccacagagtaga
tgatgctatgaggatcgggcagcattgcttctggaatcaagaactgaaggaaggtcaacg
ggcccagtcaccatcaaggcagacctattaatagaaaaggcaaacattatttagggacag
cagcgtgaaatggaaaaggggaaggacacctgaaggtggatggaaatgcggccttgcgtg
aaaacacaaaggagagacaggagcttcaggggatgatgttgctcccaaagaaatgtgctt
gctggtcatggccctggggaaggctgccatgacagatcagctcaaccagctgcctcctgt
actgctcatacaggaaacccaaggggagagctactccatagccacacccacctgggaccc
aagacctaggccccatcacgttgtcataatcccaaatatgcacacatgttcccctccact
gacagttcacttacttactttgtcttgttttgttttataaggtagggtctcgtgtatctg
aagctgaccttgaactcacgatagccttgatctcctgaccctctggctcctacctccaaa
gtgttgatctcctaccatacccaattcatattttacttaactcttgtttcatttccattt
ctctctcatgaatcagctttgtacattcatagggaaaggacccatagcttttgtttctgg
tggcctcttccaggttggagggagggacaaatgtccaatttgtcaagttcctctcatcag
gaagtgatgatactgttcaaggcagctatggcttcagtagaaatgtaccctacagactcc
cgatggtggaaagcttaggaggtagggcctaactgcaggtgtttctttgtaggttaagct
tgatctttgtgctcttctactccttcctgcacacacacacacacacacacacacacacac
acacacacacacacgcctaccctgacatggatatgagcacatataacttcagctacttag
ttttttaccaagatgccaaaatatacactagagaaaagaaagcatcttcaacaaggattc
tgggaaactggatgtccacctgcaaaagaacaaaattagacctcttctatcaccttgctc
aaaaaactaactccaaatggatcaatgatctatatgtgacttctgaaactctagaataaa
atatgggcagtagtaccctacatgatttttcttgagtaggaccccattgtcccaagaatt
aaagccaacaattgacaagtgggactgcataaaaccaaaaagctcttgtagagctaaaga
aatgatcaaccaggtgaagaggaagcccccccagatagaagagaatccttgccagctaca
cattgaacagaggatccatatcagaatgttttgttttttaaagcggccagatgtggccct
gcacatctgtaatcctagcactgagaaggcagcagagagatccctggtgccaagctgtgg
tttcagtgaaagattctgtctcaaaaaaaaaaataaataaataaggggaagcgtgatgga
ggaaggtatctacctctgaccttcacccacatgagctcatacatgcatgcacatgcacac
acaccacacacacacacagagacacacacatgcacacacacatgaacatttgaactcata
tacaaaagtacgaatccatccacagattgatcttctaagaagatcagatccaaccactcc
cctaaagctagcagccaagcaagaccttaacaccttacgtagtctgtgggggacattgca
agttcaataaataacactcagccttgagttgttcccctaaccctgctcaccccaaatcac
acacactaaagtgctattccccgcagcgagaccaacctctgagatcccagcccagtccta
gactcatcctgctctgactggtgcctgtcgtctaggacctggccctgtccccaatagcac
acaaaggctctgctcaccaaggcctggcgctaaatatctgctgttcctgtCTCAAGCAAA
TTCCACTGCA
Primer
(+)cacCAACCCCAGGTAGACAGCAT
(+)TGCAGTGGAATTTGCTTGAG


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