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Mouse element [ mm1058 ]


Position: chr11:65,230,747-65,234,369 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gm12295 - Map2k4

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
aAaCCCAGCAGAACCTGTGTAGCAgtccaggtgaagtgtcggatctaaagccaatgcttc
tcaaaatgcagcaagcgtgtaaattacccagggttttgttgtacttcaagctacgattca
gtaagtcttgggtcagctggaaattcttcacttctaaaaaaaggtttccagctgattcta
aggctggtggtccaagggccattcctcgagaaactaaaattcagaattcaatgttcctca
aatatctgataatggggataggtaagaaatcatgggtttcatcaggaaaaataagacata
aatttgagacataaatagtaggcatggcctgactcctctgacttttctttctttctttcc
ttctttcttccctttattttatttttattgtttatttgttttgccatgttggattcttgt
ttgctcagctttggctgttattactagagtgactgttacgttttctcaaagccttcttag
aataaggttagttataaacgaaagtaaatgcttggaggtttaagtgcagtctgtgctcgc
atgccgggaatgaatcctgctgctgcttgcttatttttcactccctttgttaaattttct
gttataattgtgctgtaaatcaagaaatacatcactttgtgcaatattagatatggtgag
ttgcaattgttctttccctaaattggctgacaagttcaccttaatattaactttttttct
taactataatatgctgggcagtgtttgaaaacagagtaacctcctcctcctcttcctctt
cctcttcctcttcctcttcctcttcctcttccctctgctcctctgctccccttcctcccc
ttctccctccccctactcctcctcctctccttcctcctcttctccttttccttatctctc
tttcctccatagacaaatactcttccagtgaactaccccaaacccacttcaagatacaat
ctgaaatgtgatgttgtttaataaatattatgcaattgaattatgacttgcaaatggagc
aaccttattgtgagctgcacagactgaggatgcggtaggtactcagctctgataagagag
acaccattctgcaacctggttggatctctctctctctctctctctctctctctctctctc
tctggcattgctatgagagtatctcaacagtgactttctttgtttattctttaccatctg
agctctcattatggagaccgccctacgtgattctcccacatttggttgtgagctgtttgg
aagaaaagctgttgtttgttcacgtgttaatcccccgtaacaggtgaattgagtggcact
tgctagttactatgacttaaaaccctagaatgtgctttgcattgccttggtatgattctt
ataaatgacatcaccttttaaatagaataaactctgacaagcattaaaaatggcttcaaa
ctgccaaatatatgctggagatgtagttctacatctactagaatatactactgcttcctt
ccagctccatcattggtattgccttatatagatagctgtcttggtcccacagatgatgtt
tctaatagatttccaaatcccattcgcatgcaggtagggatgcagtcttcacgcacacag
gctactttaagaaacctctttggttgtttggtggttgttttgggatgctaggggtcaaat
ccaggacatcataaatgctagattcactcccaactccatccttggagactgaccttgtat
cttaggtctcttcctcagtttcacatggcccaccttttgaaaccacacagaccttagtag
agactcctgttctgacccatttcacatttttctgaaacttcggctgagttagttgcaatt
tccagtcagtagcaattcattctctctatgtgaaaacctctgctttctcccttggaagtc
catccttccagcacagccttcaggttccttttagacatcaagtgtatccactcacatttg
gaatctcttcagccagggaagggatggcaagtcttcaggtcatggcagtgttgctgacaa
aacaatacaggccccttctcatcctcctcagagagtttaggcacagctctctcatgacag
tccccaatccatgacaaatgtccttctttctttagtggaagcacacaatactatctgctc
ttcacacctgccaaatgtcagagaagagggatgcctacccatggagcttcatgtatgtga
gttccctgtatggagctctttccagtgaagaacagcaagggtctggaagatgtggaagga
tgcctggtctaactagctttagctaagcctctttagagctggctgccttggcaatgacat
cactacataggagcagagactgaattatacacaataaattaaaagaaaccataagcctgg
acacttacacatggaaaaaaaaggcatttcagctggcctagttacataaaccagacagtt
gtcattccacagaggacaaagactcttcagactacgtggggctggtttccagtgacggct
gtcaggacgagaataaatgccccagttgcctgcagtacttatgtcccccttgtcttttca
ggccaggtagaggaacttggctctcagcaccaggaagacacctgcaggcaggaccacaga
attggcagtatcagtcaatttatgatggcattactccagcggaaaagggaaagacctaag
agcttgtcacctccacccaagggggttgctggtagacatcccaaagcacaggatcaaagt
gcctagagttgtgacatgcattgacaggaaaagagacatcttctcccagctgcagggagg
accatctgctcccagctgtgaggaggtatcccctctgcctctgggttttccagccatact
atcagatatgcctttttttttttactaagtccaacaagtcacatgaggggcttctttgta
tacagcctcatagatacacccaggcaccatctaggagtgccataatctgggaaaatcaat
actgaagttaatcaccatagcctcttatttggagtcagaagtgaggcctctactgaagtt
cttggatgatgcaagcatgaagcttcacaagatattctcctcagtggatgtgagttcctt
tcccgggatgaaagttagctgtgatgcgggtcagattgacaatgtcatcacataaacaca
ccattcataaaatgctatacaaggttttaaataaggttgcagaagtggtttctgcacaaa
ataaccatcagtgtcaacccctcaaggatgttctgaacttgggtgttctctactgagtcc
aaggtcatggaattgtataggttagaatgaaactcaattcgggagtaattatggataaat
catgccttaatttaatttattaatttttattaattactaattaagtaccagctctgttat
aaaaagaaaagtggctaagtgaatagaatcacattaaagtggtaactctcaagtagaaag
tgatggagcagtacagatgggacatttacagtgagtgtaggatatagaccccactcttct
ctgtaaagatgctttaatgcagcacccaccccttagaattgcaaaaaaggggtctccttt
cccTCAGCGTTCACACAAAGGTC
Primer
(+)CACCCCAGCAGAACCTGTGTAGCA
(+)GACCTTTGTGTGAACGCTGA


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