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Human element [ hs1057 ]


Position: chr2:59,888,700-59,891,476 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LOC101927285 - MIR4432

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCAATGTGAAAGATCTCACCTGTTtaaattagaacaccactgcctgtccatgaaaagtcg
gctcaataaagacagagtagggggtgcctggacagaaggaaggaaaaaatgcacatagac
aatttaatagtggggaagttaaaaaaaatctttgccaagtaatgaaattattaattacaa
ttcatgtcagtttttgcaacagccatgtgaatagatggacagactgttgagcagtatttc
tggaaggaattgtacatttaaaaaatgaggcattgctggagagatattgtgtgtgggaga
atttacaggagcatacacccctgtaagttcatggggtgttaacagggaagccatggcacc
tttaggccagatgtagcttgcacatcaaaagggcattgcattcacccatgtcattgtcct
ctgaaagatcaaactctcattatgcgcctgatgcagtatcttctatttgaggcagtttac
atatttctctctttaaaaatagaggcagctacttccttctttccacaaatgctcttatca
attttgaattacagagatctattttgagatgaacacattgaacaaaaccttcatccgtgt
gtgcgtgtgtctgtgtatgtgtgtttttatttcccaacatggcggtaggagcttatgccc
gctatctgcataagtcttttgtgtattgctaatggagtgctggaattgtagcagccctga
gcagggaatacatgtgagcaacaatatgctgagagacccctcagtggaatctaatctgtt
ccagctcatgcactcctcagaaactatttaactttcattaaactgtgtttgatatcagct
aaataggatgcatacggctccaatatagctcatatggtcgcattcattcgatcacagcag
tgcttttttcttatatttccccccacttgtgtcagtacccagtatagctgggtaaatagg
agacctttgaagatgtagttagtactcagatttctttattcttttgtgctggtttcttag
tgttgaaacagtgattcatgtatgtcgcagacagcctccattaatttcatgtaatgtagc
ttttatctcgtagctgggacaactatcttcagcattctgtcgctctagcatcccctgctc
tggccacagccccctttgcatctcctagtttccctccaggtctccaccactctccataat
tcctctttcttcatggaaaatatgttcatttccagccgctgtatttttctggttgttgta
gcataagaacaagtaaataaacaggttatgatgagaaggagaaaaaaaatgaggggtgag
attttcagtctggataagcctttatatccgaaggagaaaaaaagaaaagctcctgggatg
aaaacatgtatccgggcaggagaacagttttgtacccccactctgctacacacacacaca
cacacacacacacacacacacacacacacacacacgcacacactccattcaaaggacact
aatttgattatgaatacagcacagtaggagcatgcagtttcccagtttctgaggaggaaa
gggctagtgaatttacaaatctagagctgttaaaaagttttaatgatcaaatatacataa
aacacacacacacaaagtgggacaaaggactgggcctattaccaatatgatatcagctaa
ataaacgtcattacttgcaaaacttattttctctttaatactgagaaagtgttcggaatt
tcacctttaaacagattaaggggacatggatgtgatttttctacgttatcctcactgata
ttttttatcatgttttattaagtccaaaggaataatcacaattttttagatcacttaaga
gaaacaacatggggtcctttggtacagggaacccaattatttccgatattattttgtgaa
cctttttcattttattagtataccagagggttttcacattctcaagagaatccagctatt
attgcttttttggaagaaatgtctcactgggacaattaatttatacattaacaccagtca
cagttgtgctgtatattattaaaactataaagggaaaagggccacatttaatcattcggt
tcagaaaggggtcatttatacgtgcatgtgtatagagaataagccactccatgagtagcc
ctcacaacgtaagaagtctgcaatgccctgtgctggttatgctctctccagaaacactac
tggtttacagaaaagaaaaatgaagctgagaaaggtgaatacataggcagtcttggagcc
tgcctatgtctgtctccactacacttgaggaatgttatccgtttaactttgttgatgagc
acatgtaattaagacgctgtgctttaatgtttgatggtgggacttgaaagggtgatttaa
aaaattatttagataagcatattgacattttagtatatattattaatcttattaatagta
ttaacaaaggctaattgaaaatgcatcatctataattatattagtcttcattttagtaca
tttttgtcagagtaaactagaaaggagtaattaatgtgccactgttatttacccctgttt
gtattaaagctggtgttacacaatgttagagatgaatatagcctgatttcactgaatacc
aaggagcaagcattcagacgcagtaaaataagcagctgtgttttcttgtaccaggaacct
aaaaataaaaattgacttcaggattgcatgataggtgtgcaggagctggagagagGTTTC
TAGCCTCTGATCGTCCA
Primer
(+)CCAATGTGAAAGATCTCACCTGTT
(+)TGGACGATCAGAGGCTAGAAAC


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