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Mouse element [ mm1056 ]


Position: chr12:40,121,545-40,124,971 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Etv1 - Arl4a

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
tgaCACAGGACTTGATTGGGCAACtcaagaaaaaagacatcaataaaagcaaaaatcttc
tcaacaatatttattaggataataatagaacactacaattacataattcaacaggaatac
tagattagctaaattaatacataagcaaaataaagcactgtcatatatttaatacaaaaa
tacatcttgcatgtaacctagagaaatacacattggcacaatcactgccaaactatttta
ctcttatattcgtgtatgcattccataatacaactaaattgacttagatgtataaaaagt
ggaatgtttaacatatcattatattggtaccaaataatgaaatcagtttcaagctcatcg
atagcataataaatgaaattttttggtatagtatattcactcaagaagtgcaacagaaga
attttaatctagttttagctatattaaatagcataactataaaaattaagtaaaaataat
gatataaaaagtggtacatattgatagaaattatgaatgtacaatgtagaacgatgataa
actaaaacatggtgtttgggcatgtgtatttagtggcaaacctgcaactgagggaaagcc
atgaagtgtattatttcttgatcttgatgatgattgaagtgtgtttgttctctttatgaa
aatttattgggctttatattaagttttgtgttcctgcatttatggatgaggtatatcaca
ataaaaatgtcttatgaaagaaaaattatggagatcaccctataataataaaattctgat
actaataggaaaataataaaggtcaaaatattttgaaagtcaaatgaaacaaaacttgag
attatatgtaatggtatgcaacattcaacaaatagattttccccaaaatatctttttgtt
ttattggaaggcagagatcaaaacatcaaagacaggcatgagagagtagctttatggtag
aagggaagcagttttaaagaaggcacataactgtgttcttcacaccttaatataattgct
actcaatgctaatttcatgtttaaatgatattttgaaacaataaaaatcaggaagacatt
ttatacattggtaaaaagttatcatgccagacaatatgagtagatttaacactatagtaa
tttatacaaattttatctacatgaccaattttattttttttaggatttatcatcttaaat
aatgatctctaataaatagaatatcactgtattagtcattcttgaattgttattttgtct
tagtatactatacccatgctgaaacactatatattacaatcatgtgttaatcacccaatt
tacattcattaaaatcttacaaaaataatctattaaattctataactaacctgttcaatg
ttgctaatgtctgcaacctgtcataaaatcatgacattagaacactacaaatttgcaata
ttattttaagaaaatattctttgggttagcaaattattctaaaatgaaattcatgttgat
gatttattctcagtttaattgcaggtatgtctttataaataatattagaaatttttataa
ttgaatcgctttatctatacatttccaaagattccatgtcaaatcttctgatgaaatttt
tatgctaaaagattttctctttttaccatgatggggtagactatatttttgaaggcctta
caaattatttcttagcccatcatgttattcacgaaggttcaagaaagggcccgcacattt
tgaactcagtctcttaatgagattttcagaattgatcttaaatcaaagatacaaatttgt
accaatcttctaaaaagtattctctcctaaatgcctttttaatattttaatagcatactg
tatattcttaatgttttacatgttaagtgagcctcaagtaaatatttaaagagaaattgg
atgcataaaataagtcaaaatcttctacaaatgacagaatctgattttatttatgtaaat
tagtaagtactgacttcacaatgggagcttctcaaaccatcacatttccttttaacatat
ctgggttttttttgaaaataattaattagtagacatagttttctacatttttaaaaatgt
atttctcttataacaaagctcttatcaactctcaggtggtaaaaccatgtgtaataggta
atgatgaaagtccttcttctggataacccttcatagtgtttaatttgttcagcatcaatg
aagatttgagtagaaactaaagagatgcagagactgagatagaccatctacatgaagcag
tttgtaggaaaaatagtccagatagtcatagtatcagaagtgtttatgatatcttcagag
cttcacagtaattattacaacaaccaccaaaatacttgtcataatctggcaaattaacca
tatctggcaaatttaaatttactccatttacctaatttagtgataattatttactttctt
cttccttttttttttttttaggaatccagaatgttgttcattgatgtagaaacaattttg
aaaattaatatttttttgaaaaacaaactaaaaacaagatgctaaaactctcattaatag
taataataataataataataataataataatgccactaatttcgtgaattcttcaaacca
tttgaaaaagaaaaaaacatgtgattggttccatatgtctaaagaatgaaagagcttgtt
gttgagtaaactctggtctgtggggcttggttatgatgatgaccgcatcagcaacttggt
tgtctctgtccctgtccatttcattccactttatttctagggagaaaataatataattgt
taatgtgacgagttcagaaataaatgcttgacttaaatctaagaaatgttttaaggtttc
aaatcacaatcccttcctgccacaatattttttttcaagcaagtttgttttgttttcaga
atccttaccctccttcgtttctttctgtagaaatcaaaacaattctctatactctacaca
ttaaaaccagcacaatattttgaaactattttaaagtaccaatgtagtcataaatccaga
aaataaataaaagttggcttgggttgatagtttaagaaagaaatcataggttcttgatag
aaagacaaacagatgcttactttaactcctcacacatcctcaactaaagacatttgcatg
cacacataaaattttctactcagccctcaccctgagctcctgtggagagcatgcaaatac
tttctaatagtaaagctaaaagtgcattggtattacttacaaaagaatgtattttttcca
aagcaagccttcacctatgcaatgcattaacaagataagaactgtctgctctgttcatca
ttttcatatttatgaaacactcactaaatagttcctacttatttcttGGGTATTGGGCTA
GCATGAA
Primer
(+)CACCACAGGACTTGATTGGGCAAC
(+)TTCATGCTAGCCCAATACCC


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