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Mouse element [ mm1053 ]


Position: chr1:188,411,390-188,414,852 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Lyplal1 - Tgfb2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
gACtGCTACACCCAGGAAGAGCTGcagctgtctcaggtgagctttggttagacctcatga
aactgaccctctggagggaaagtgggtgcttcccacagtgcatgggtaggaggaggtggg
gcacttggaggggtgaaggggccaggacaaggttccatgtgctgctagagtatgaagtgg
ccctggtgataaaggctcttgctttaaagaatgctgtgggtgtcacagctgtgtgcccac
tcagtatagcaactaaggaaaaagtcacctaaaattagacctgagtattattagaggtac
aaattcagtaattacccactctctaattcctgccggaaataagtaaagcaaagcctgttg
cttttcactatgacttgtgccctaatcatgatatcattcccattgaacttgaactggcta
tctttgttttcaggtctcaattaggtcacaaaatccatgctcacttagagagcaagaaaa
aaatggatacatacacacacacacacacacacacacacacacacacacacacacaagtta
ctgaccactggcatctcatcccaatgatgctggatgggaaataacagaaaccaaacaggg
acaatggtagtgtttctttctcagagataatcagggaatatgctagaaaggtggactgac
ctatgaagggaaaagaagaagaaaagaaggtaaaggctgattcatctctgaaggaggttg
gaaaagaatgtagtttgactggagatggcaaagaagagcaagagttaggctgagggaact
cagagcattggctgtcagctccaggccattccagtgccctgggaaggaaaggcaagggac
taaagaagaggcatactgttgggttgctaccaagtgtaagcaagaattggctgccttaaa
aagtgaagccttccgacctagatggttctagtcacagtgacagcataggtctgattcagc
ctgctcaaggctagggcaggctacagcgttctgtgtccatgagaggacacaatgctacct
tagaaaatagctatagactgttaacaagccaaagggcactgacttgtgatataaatatat
atataatacatatatgtgtattaattataatcatattatataacacaaaactatatacag
tttatagttatatagttatatatacagttctaattatatacatagttataattttatagt
tatagttataagcactgttatggggaaaatgcaggacagaagggacagaagtcaaggagg
aaaggcaggaaggcaggaacaggctggtggttgaatgccaagaaagcatgcccctaattt
tgaagcgtttatgctggcataacctttactctttagtctatcaggaacggccaaataaca
aaagttgtaataagcgtgaaactgttccatgtggctaaattatccagtggtaacggggaa
ggaaaggtgagagcatgttgtgatcgtcaatttggattttctaccagatcttaaaaccat
tcatcgggagaactaggaaaggacacctctgggcctgcctgtgagctgctgctagagaag
attagccgagaactgagtgaatgagagccaccttgagaggagtgccatctaacaggctgg
aggtccgggtgacgtgagaaagtagaaaggggaagcaagccctggattatgagtttcttc
cccagtgggtgtggtttgatgctgccgattcagatgaacatcacactccagcatcacact
ccagcttcttcagcctttgacagacctgcagcagtgagatgcaaggaccttggaggccct
caccctcagacccaggacaaccgttggcttctcagtctctgttctcacaagcatcttgtt
ctgcgttccctagctgacacccagctctccaatctacagaggactgctgtggccccacag
agtactccagactattagcttcctcttgttattgtatatattccttacccttaatggtcc
caatacaagggtgaattatcactcttctcagatctgtcaccatcaatccaataatgaaga
gaaccattttcatctgaataagcaattaacctccaaggtaggatggctcagtgagagtgc
ggtcctatgcaactaccaaattctattgagttaaacattgtgcctgctcttgccaaggag
taatctaccaaaacacaaaggcattatttaagtgctactcataaagagaaaaataattct
atatttaatatcatctaaaggcatttggcttattatacaagcattaatcaactgttacta
ttatttattaatagtggcagcgtggaaccaaggtctacagtggctgctgaggtcagactt
gaagaaatgactcacatgcaaggctgatctacataagtagcctgtgctaagactgccatc
tggtagaacaatctacatcacacgactccacgtttcctgttacccaaggtaagtacattt
caagcatgagggaaaactttatcaagtttctctaagtccctttacttcgacactaaagtg
gcttacacagggaggaggggaagggaaagtacgaggtgcaggctactctctcatctcccc
agattccctcttcacagaagagaaagactttcttagccattatcactcctgtcattgagt
ctgtcaaatttgcctacttgccctttaacaatgctcttcaggcaacagaacagggatttg
agataccattgaaaatggatgtattcatttgagtttctcccaccccgcctcctactactt
tccctctctttctctatgtatttttcttccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtcttccatgcagaattgagtgtgtgtcaccaagtctatgcaagcg
aagccatataccctaagcatctctctgttttgtactaaggacctggcatctgagataatt
ctaacatgaaactggcattttcagtttgctcctgtcgtaagtagagcctgccatgaatcc
tatctcaggcaggtaagaagcccgctacccccgacacccaccacccacctgcacgaggca
ccctggtacatcacctaaccctccatttctctctgtggagattccaggtccacccatcca
cgagtcctccaaaggggttttcagaacataggacaagccaacatttctacttagttcaga
gtcttttttgatgtttgattttcttcagacttttacaaatttggaattttgtaatttaga
ttttaaaaattattttgaactataaaatttatattataatttagctaagtaacagatatc
actgtcccttttctatttgtaagaaaatgttgtcctatacaaatttaaaggaaactttac
taggcccgggaagaagagcaaactgctgatttagtaactgtgctaattagcaatgacagt
gctcactactagaaatgcaaatcCCGTAACACCATCAGCATTG
Primer
(+)CACCGCTACACCCAGGAAGAGCTG
(+)CAATGCTGATGGTGTTACGG


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