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Mouse element [ mm1051 ]


Position: chr18:54,641,248-54,644,594 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: 9430076G02Rik - 9330117O12

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CttaATGTGCTCCTCTCTGCTGGTccctaattccttctcgcgggacacgtgtcctaactt
ctgtgtggagagaactgtgtgagaggcctgtttcttacctagagagccgcactctagtga
ggacttgcagcagacaaatcccggagtctctgtgcccagatgtggctctttcttttctct
cttactcatgtgacacgaagctaaccaatcagctttgatttcttaatctgggaagtggag
agaatgactaattaaagacagacttagtgatacatatctataacctcagcactcaggagg
ctgagacaagaggcttgtcagttcaaggtcagctgggctacctagcaacaataaattgca
cataatttataatcatttttgcatgaaattattgagttagtacatgtaagacgtactgaa
caatgttcaccctttagcacctcagcaagccttcgtggtcatgaggatttggagtaaggg
tgtgaggagacagaagatgataagaagagagatggatgaccctgataggggtaagagtaa
atgaaaactagtctggaaggaactcaatggatgtggtagaacagttaacagcagacctca
gcactaaccagcaggctttcctgctctaggtcaaccgaccatgctctgcctctgtcctct
aatagagtctaaagacttcttcactaggtggtatgtgtcatggattgaagtgatataaac
ctctgtggacactccaacttgcttccttcgtttataactcaagtgcgctggcatgaaaga
ggtgtggcttgtgacttcaatttccaacttaaagatcttgtggatgtgaatctgactggg
gtaatgatgattgcgacacaggcaaggagacacccagacataaggcatatactcttttat
aatgttatcccttaaacacttattttctacaggaaatcaaatactctagatgcacagcac
agggtttggaggctgaagactcctaggagcaagaaaggaaggagagaacccaaggaaacc
ctgtccagggtagagcggtggaaacgtggcgctaacaaagacttcctgttcggcacagaa
tccaggctggcagaggcggctgcagggctgtgggtgtactcagctgtgcagagctgatta
tagaagatgaaagggcttggcaattcacttcatctcatgctgaaacactgctgacaactg
aaagtgaggacagaaggattcatttgttcaacttctgttttaaaaagcagacttcaaatg
ataccatggagaaaaggaggcggggccctggtgtaatggtgtaatgcgatgctttttttt
tttttttataacacactagctgcagcgtttatgttttgtacatggctttggaaggcaaag
gagttgtctctctcctccctctctctctctctctctctctctctctctctctctctctcc
atggttcccatcaattccaaggaacaggacagatgaatgtgtgctcagtcactgatcaga
tagagcatgtactccctaatttgacagagactatcgtgtccactcatatctgagtctcac
gataagtcagaatgaaaaactgtaataccacagagcttaaatgcttcttagaagcgttgg
aaagggaaaggattttattcaggatcagtgtgctgactgtggataactgtatgccacata
atagagaatctattttagatttttgtaattctgcctatttcaaaatttagctcacaaatc
cagatttttcacttatctacatgggggttttttatgttttgcttagatttttctaaggaa
atgccatagttttgtttttaaatgtaccattaaatgtagcacatttaacatttgaaaaca
gggaatattcttctcttgcgaattactatgaaacatgatctgagaaattggtcttatccc
aaaagatttataaacatgggtaccccactctactggtaaactattagttattcaagatta
atgcataaatgcagatccgcgtgttaattgaagtgataaagatgtagattcctcctgcag
ccattaaaattaaagtgttcataacctgggcacgtcctgctcccgccattgctgtcttaa
gcaattcccttaagtgattgatgcttgtctccatatgaagacttcagtcattttctctgt
aggttttcgctcctaagaagtcacccaagcaatggaagtaggaaatattatagctccaat
acattctttgggtctcatcacagtctcagattgtgttttccaacaatattttgggtgcac
ctcctgtgtgccaggcactgcactggggcataagtaagagatggtaccataaactagatt
actatctacatggcccagggtatacagggtaccctggaatcatgggtattgaatttatac
cagtcgcaactgttttttgagaacaataactatgcatcaaaaaggggccacattatagga
aacttctagagatttttttttcgctaatgaagtcatatttgagtggagatcggactatga
aacatctagtcttgtaatcttgtgaaaaccatgctcaaaagatgtgagttccagaatgac
tttggtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatgtgtgtgtgtgtgtgtgtgt
gtgtggccaagatcagggtacagagaggaagaagcaagatcaatggtacagggatgggtc
agcaactcttcagaggttctgacaggtcaaaaagctagacatctttctgaagagcactgg
aaactttgagaaggtgtttctggtctggagagtggtgctgagtttggggatagcaggaaa
acagctcacactgaagcccccagttctgtcctgaatggtgcagagcatcagtgatgggaa
tttgccaagcatccctggtggaaacttgagaaagtacagtgatgtgaacatgtaccccca
actcagttattttactgagattttatttggaagatcaccattccaactcaaacatgtagg
ctcaagccacaagcactgaagtttgtgtaactatcaaaagcactcagatataaaattatg
cattttttgctattcaaaaattaaagatactgaaatagtgttaatcatgagaatgctttt
aaaaaaggagccattaaaagctatagcccatggaccagtgggctacgatttcaaacccct
tctattcaggtaagatatttagcttaatattaaagtatgatagttattctaatcaaatat
ccaatcatatccctacactgagttcagttttcttctctgtacctttacactgaattgtgt
atgtcaaacaaaaatttaaagtgtAATCACCTTTTCATCCAAACTGA
Primer
(+)CACCATGTGCTCCTCTCTGCTGGT
(+)TCAGTTTGGATGAAAAGGTGATT


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