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Mouse element [ mm1038 ]


Position: chr1:75,884,884-75,887,894 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Slc4a3 - Gm17751

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCACAGGGCCAAGGTACAttagtgtttcccccaagtcacaacacttcaaggtagaagcag
tttgagagtgtttccatgaactctggggtgtggtgaggggtgcggtgggcgaggtggggc
tcaaccctgtctgtgccagaagaacttttgggactcttgtagtgaggcagagaatccccc
tgagcatcagggcaggaaataaggtttcacactgctgctacaagtaaacttcccgttgaa
aatcctagacagttctaatgcgtgtttccttatttgttttttgcagcaacctcctggcca
aactgaccagcagggtgtctgtgtttcctttaaactcccagtttaaacctggcttaaaga
aaaatccttcttttgttaatctcattgtaattgtgaaacaccgtgtttggggaagagttt
caaggcagaaatcaccttgaggtgtagctccattgtcttttaatttagagcaaaagaaat
tcttctagtttctcctgtagcccgagggtgttggcattctcagcagcttgcgcaggagaa
aggagatcatgtttttagagggggcttctttacccataccttttacttctgtactgttca
tgggaatcatcttaaaaaaagcaaaccatcagttgccatttcctattgtctggggaaatt
ggcacacatctttagtgcttaaagaacggtctctttcttgctgctttgcattgcaaatga
gcttcagtccagggaaggcctaggggagccgaaaggcacctttaacatttgttttccggc
tgccaagagagttatgatgagttattgagttcagggcgagtgctaccaaggatgtctggg
gatcagaagtactgattctggctccctggctaatcctgaaacccccttagagaatactga
cccaaaggtactcatggcgcattctggaagcaaatgggggtaagaaaccctctaggaggg
ggggggagagagagagagagagagagagagagagagagagagagagagagagaagaggga
gaagagggaggagggagggagggagggagggacacacagagacacagagacagagagaga
cacacacagagagaggcgggtaggagtgtgtgatgctgagagatttaacatccacagtgg
tagaaacaccaagctcagcgaagctgctgctagttagctccccctataaactcgcgatgc
ttctgttattttgttgctttcctggagtttcttcagaattccggaagcctgtttctttcc
acccttagtcttaaacactttcttcttctaaaaaacgctaggatatccaccccccccccc
cccgcgcctttttttagaggaggtccctgttagaacctggactgagcagggggctgcaag
aagagcacaaatcctatttactagtcaaaataccagacctggcaggtccttatgaaaatc
aaggggacaaattatgggaatgaatcttgaaatgttggttctctattcctagagcttctg
aaacaaaggcccattttctcctttcatgtttcctgtacagagcctctgcttactcttttc
actattttggaaagtttcaaacatacaaaagtagagaaaatggtcttgtcattccttagg
gctcccactgtctttgttcacgcctctgagtcttgctttcacagggcttcctttaccatc
ccttccccccatagacttctagggattggctgtcctattcacctaagacaaactctgagg
gcttccaagcttggaggctgtgttccagctccagagcttccttccagccccacagcttcc
ccctccccaccttctggtacaatcattaagagtttgtccaattccccacaagactgcctt
cactgtttctcagaccatctcccacccttctttccctgttttatgttctgtagtcctggc
tggctccctactggactccaagcatcttcagcaaagggtctgtgtgttttgggtacccgc
ttcccccctcccccgcccccaactcttgatgtgcacctagtaggcattcagaaagtgctg
gcaactctgctagcacatatggttcacattttctaaaaattcctctttgctctgattatc
tgccagccaagtgtactctggggtagcaaaaggtaaatggactaaaagatgtagttcaag
gagtagtcaatagtgtgctcataattatgagcgggaatggaataagcataaactttcttg
cataactaatcaataccttaatatatctccattagtgagggtgtgttttatgttattgat
gttaaatatctacctattgtgtcagaaaggtttcagagtaattgttattgatggcagaag
ccttgtcagctgctaaatgtagattttctttacataaaaaaacagatgacgattggctga
gatttatttttcctgtattgctataagccagattctccattaagctataaaatattatga
tacacttgaagcaatgtaatgtgatccaaacacagttataagtcatcccattattagtca
catgtgccgagacattagcatagccgttaactagttctgggttgagctccctgctcagga
atattttaccagtgcgattgcattggattgcaattccagcttaattatccggtggctgta
atcacatgcttaatgataattggctggcggaatgactactgacatgggatgctgaggctg
aatttctaaacataaagaccctgtgtgaagagcagtgtgaaagccacaccgtcgttagat
gggtttcaggtggctggatgtggttttattcacttagctggcctccatggttggcagtat
ctgtgcagtagctcagggagtggaggatggccataagagtctgtgcatctctgtctttcc
ctgctctgtccggatggcatgaaatcacactcccagatgtttatgcccacgtcttgctca
gatatccagtttatctgctttctttccagatttgcttgtttgtttgtttctTCCTGTAAT
TTCCCCCTGGT
Primer
(+)CCACAGGGCCAAGGTACA
(+)ACCAGGGGGAAATTACAGGA


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