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Mouse element [ mm1019 ]


Position: chr6:51,119,198-51,123,798 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: C530044C16Rik - Mir148a

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGGACCCTTCTCCGTTTGTTtaaagacgctttttttttttccttaaagcactgaaaaaaa
ctcaattccatccaccccataaaagggaactatgcgtacccaaaaattcttacttaagtt
tctaagtgtgttttgtttcggaagataaaaggccaataagtttataggcagtaaaaaata
agaaacttaagattgggacttctggagaagtaattctaactcaaagatagtgttaggccc
tcctgtctgtcccctgcagtttgtgaagttgactcttaggcaccagagctgaagtaacgc
aggttcgggatccagagatagggtgtaaagtaaactcagttagggggccgcaggagagag
gactagagaaaccactctaatcactggcttctaaataaaattcagcagacgggaaaccca
aagtaacaagcctatgaatcgctattttgtaggacgagggcctcgtggctggattctgag
tgattttttttaaagtaataaatatgcctttttcagagttattttttgaagactgggtac
gattttaaatttcatgactattaggtatagtgatccaaagcggagtacaggggtttttgt
gggtgggtgaagaggccgcgtggtcaacccgtaatatgttcgtggaaactgcagagctcg
cctgtcaacttgattttcttttctttcttcccttctcccctctgaaaataccattagctc
ttagtctggccttggggttgtggtcgcacgaacacctctcttcctgataagtccaaagag
aaaaacatatacactggaggtgccagagataaagctttcccggggtttcatcctcgtgtc
ttccgctggagttggcaaaacaaaagcgctgccctagaaacgatactaaagcacagaaag
tccttcctgtgaccgaggtcccaacacgaatcgctgaaagagccgggtgtgttaactgca
aatgtgtccgaaagcagcaacgcaaccttcggctcccgggctgcgaccaggcaggcatct
ggggaaaggaagagtggtcgttggaaaattaagctttcccctccaactttaatttcactt
taattcctaaaaaaccgaaaatgacactcccgaagcgcggccgcctcgatcccttatggc
cgcccagttccctttaaggaaaagtttttgcaaacactgaatgtgtagtttactctaaaa
cttgactgggcaaaagtctcaagaggaagcttcccattaaagcaacaaccaacaaactga
ttttcgtaatatgtagctttctaatagtacaagggtgtcccacttcactcggttataaaa
tataaaactgtttggttattaatttttctaaattacttgcagaatttggggagagtgctg
agaggcaaagaaaagatgagccttatgccatctggcggtaacacgtggaacttcacgaca
gccaccaaattccactgacctgtaggtctgaacctacagggatttcttcaccaaacggct
gtgtaaacttcgtcctcttgagacgaagaaggacgatcttcgttacagaagattagattt
gaggataaaaatattagcaaaaacaaaaaacaaaaacaaaaaaacggggatagattctga
aagtctgtagccacatagatatttttaaatgaaccatcatacctcttggggaatttttaa
tgatcatttatattcagtgacaaaaaagtttaagaaaggctaaagcgagcagtagaattg
agtatttcgtacagtttggcagtagtttctgcagtaccggctactgaacacgtgggggcg
tactcaagtttcctctgatctctggtaatatgattccttcacttatttgcatgacttgtt
gtgattggataatatgttttaaaaacgtcaattatacgtcagaccatagttagccaatca
gcagcctattgtagcgtgattggtttccactagaggtgtcaatcatccgaaatttgcata
ctagtcctccaacaggctggagcctgtcagtttgctgtggctgctagaagagcaggagtc
ggacggagaagaatgaaaatatacttttgctctagcaaagcgaaagaaaaatatcgtttt
tactcatcgtttcaaaaattaattcagctatatatctacctaataaaataaggactttca
atgaaacaaaaataagcagctatcaaagccttggttattaattttaggtttgctgcttaa
aatatcaataagtagtcaaacgaataataaaactcctaaaattaagctaacaattttttg
ttacaaatgatcattgtcaaattaaaaatgaatatgacatttataaataaatgtatttac
aaaatactgctttcagtacataggcaagctaaaagcttggcttcgtaagaaaaaacacag
aaaagagaatctaaaacaacattttttactttatcaataatgacacgcttagatcatcct
ctcctccgtatttatttaccgtgcattcacagactggaatgcttttgtttgcacatttct
cctcacataaacactttttttttaacggaaaaaaaatctgtagggcctgtgaagaagtca
tggacagttttaaatttagaaattcgtaaagccaaacacttagattctcgactagatctt
ccaggaatattgtaatttaaaacatgcccagcttcacaaggcgtttattattgccctaaa
atacgtgcaggaaggaatccgcggccggccggagtgaggaaacaatccgggcctctcgct
tccagacgctggaatttggatgcaagcgggcagcggcccagcggctgcagctgcagacac
cggccctcgcctctcaagaattttgtagcaggcgttaacaggcatctacacaaaccgggt
ttgatccttctgtataaagccggtcctggaatgatttccaaattttccactcagtagtga
gcggacttgtccttccgcggttttgtctttttgtttgtacgtatgtttggggatggggcg
ggtagttttgtttgtttatttgtttgtttggttttttttctgtcactattctttagtggc
tgcacttttctaattttcttcctttacgtatttttttcctctttatttattttttttcct
tccacccaagcactcttacagtgtgtctttttctcgggcctcttcgattacaagccgctt
agagagctgtggcagatgtgtttgtgagaagccacacagggctggagtgatgctggctat
tagtggagtgcctaggactacgatacctgggacattgagggcttgaattgtgtgcttttc
cggaaatgcacgaataacacggctataaaaataaacttctggcgattttaagtggattcc
tagaggaaagcaagcctcctatttctctttactccctaccaacagttagcctggtgaaga
ccgtcctcagtgaatcccttccaggccctcctagaggatctgtggaggaccgggcacaac
aatctgactcagcgggaaatgcctgcagctaggactgcaccccaccagtgtcagcaccca
ccacctcgccataggtctctttcaccttagctctcttccttctccttacacctcatttct
ttctttctctcccccccttcctttctctctctctctctctctctctctctttctctctcc
atccctctccctctttcttttttctatgtgtctctgtctctgtgtgtctctgtctctgtg
tgtctctgactggctcactcatccacgcacgcgcacttgtttccccctggctgtcaatca
cacccgcacaccctagaacgcttgcgcactggaaaaatccagcctcccaccaaccccacg
ccctttctactcgtcaccctgccatattgaccaataagagcatggatctgggggcggact
tcgagaaataaaccaatgagagagcgattggaagctaaggctcaagagaagtaaatcctt
cgtggtccgcattgagtcgcttgggcgatgatttatgcgccccttttattatttgtaaca
ctttgggaagttattaagaggaagatctactgcttcctcttttgggggtggaactggata
gtaatatttgtcactggcgggttttagggtagagtggtgcgaggtggaaggccgtcggag
actggtttgttttgtgggtactgtttttcattacacgacagattacccttttcattacaa
gctgtagacagggccaacttcgaaggtcttcttggctgaatgatcttggattactcagag
agctgaaacctgatgccttttgacttgcctgtctatacccccggcactagaaggagccat
ttggggaagatgttgcaacctctagttgcaagagaaagtaaacagactcccctcactcag
gtcccctcccgagcaccgagcaaatctccttgtgcttttcccgcctggatgctcattaag
tcttagttgactctgaggcggatgcaataaaacatggatggtttcagaaccccaaacaaa
ccgagtttctgttttactctcagccggaccacaccccctgcctctccactctccccccac
ccccacccccccaaggaaattGCATTTTCAACTAGCGCCTC
Primer
(+)aggacccttctccgtttgtt
(+)gaggcgctagttgaaaatgc


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