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Mouse element [ mm1016 ]


Position: chr7:105,962,165-105,965,497 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Prkrir - Wnt11

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCCTTGTCCTGATCCAGTGTgtcagagaccaacacataagaggcagagagcttggggtaa
gcagttaaggaagacttcctgcagaaggcagcactcccagaattctttaatactggaacc
agagagaaaggcatgctggggaggaggtacagagaccctgggggtggacaggagggatgc
ttgtgagcctcagggagggaaagcagtactcaagacccatgtggtatgagatagagtgag
ctatcctgatgtgctaggaatattccagagggcagagcccgggtgctcctcaccctgact
ctcagcgtcaagcctggagttggctgaaagcacttaaacccagtccctaagatagcagat
gtgtgtccttggggcagggtgtcagtcactctggcaggtcaaggggtgtgcctatgtcct
gagttcagtttccaggacacatttgatggagggagagaactcagtcctgaaagctgtccc
cctcccacctcccgatattattaaaaaaaaaaaaaaaaaaaaaagatgttttagagatgt
ctgcaaaatgcctcagacagagcctgctgcatggtaaggttcttagcaccaaaacattgt
taccttcgttcgctttctcctcacgtgaaacttaaaagtgcttcaaacccacacagcctt
ggccgagtctgccatcccttctcaagtgttcagacaagaatgtgcataaaacggaggcct
tgctgggataggctgggtaatgtcattttcagagacagcacggagcaccagagccaggag
tttattggggagttggggagtgacttagggacatatcaatgtggagaattgctcttttct
ttgtaaactgtgggaacagtttacaaatatttcctgaagaacacatgtgagcacacgtat
cacgtaaatatctgcatggaaaagcagacgtgggggaaacaaggcaagcagcgacagatg
ctcaatttcaagtccaactttgccacttgcagctgtgtgaccttgagtaagtcatcaaac
ctctctggtcccttcacttaccagtaaaatgggggtggcttttatttttaaactcggaga
gacagagagaatagaatccagcaagagttgtctgttccgtgagaacagaggggtcttctg
tctggcaattatcctcaaagaacttctactccaaagactggaacagtgtaaatagaacag
aggactcccgggaagatggtgggcctggaggaaggacgaaagggagtctgtgcgcatata
tctcggggagactacggctaaagaaaataagaagaaggggaccaggtctccggccccgcc
cttggcagagcggccactagcgatactgtcaatctttgctggggtgcagggctgagacca
ccctcccagagttctgtcggtgcttcgcgtggccctcaccgaggccaagacgcacggggc
tggatgtggcgtgcaagggtgggcgcctgctgtgtgcctggctaggggcgggacccaggg
cagggagcggctggtaagggtccatctgccgcaggccgagagcttcaggagggcagagag
aaagatgctcttctgggacgcgcagggcacagtggaccagggcaaactcccggccactta
cggactccaattcgcgcgtggctcaccaagggacacacttacttcttcaccgcactctgc
ctggcgagctgcgcaggcgtacgcgcatgcgcatatgagtagcttccctagtaagaactg
gtgaagcctgcctagcagctggctcgttggtctaggggtatgattctcggtttgggtccg
agaggtcccgggttcaaatcccggacgagccccacttttccttaatttccatttgtgatt
tgcctgcttccattcataatttgcccacacagcaagtcgcagaaagggctaactctgaga
aagaccctattctccgtttgaagtgaaatattttgttcattgggcgccatcctaactaaa
agaatttgttgataaaaatattgacgcttctcaaaatgtttgggctcgtccgggatttga
acccgggacctctcgcaccctaagcgagaatcatacccctagaccaacgagccgctgtga
gtaaagggctcatttcattttgtaagtggcatagaccgagcccacacctgcgtgattatc
aaggtctatagctagtaacgggagatccaccacccgaacgagctttgtttcccgccccaa
gtgaaccagctcaagccggccatggaaggcccgggcaccgatactccgtcgccgcgagct
ctgggccgggagagggcggccactgcaccgcgttctaggttcaggtttctttgcgtctca
gattgcccagggcaatcgagtggccccgccccgccccacaggccccgccccgcctcacag
gtcccgccccatcctagtctaccctgttgggtcctctactccgtcactttcgcgcccccc
cccccccccaccccatcttgtcctgttccttttctgccccgctgagccccgccacacctt
gccccgtccacccagttcctgtacgatcctgttagtccctgtttgttcctgcccacttct
gcccggttctgcccggttctgccttcttcctgtaccgccccactcggtcttcttcctgta
ccgcccctgcacacccttctcacgccttgccacgccctgccctatcctaccgggtcctgc
tctggcctttcccatcacaccctgccctgtcctgtcccatcctgctttgttctgtccctc
cctgtccagtccgtcttagtccagccccattctgcttttgtgcttctttgcgccgggctt
cgcgttaccggagccaaggctgttgtaggttctgcacaacctggctcctggacgtcagcg
ttgggaggcggactgatgtcgctagagcccagcctgagccaggccagagatgcagactcc
tggtgtagctggcagcagtatggtccagactcaccgagaaaggcggcttcgatgagcccc
tccaccgcgcagacccccagaaagtggagctagtgtgggggctgctccagtgaaatgacc
gatggctgaagctgcatctctccagcctggggggctggcccccattgtcagtcaggtcac
tagaaaaacaggcaactccagtcgatttcagttactgtggttccttttgtgagcttgaac
acgcacaagtgttcatgcacacatcctgatatcaaagaaggggaaacccaggcagcaaaa
cctggcccggaggagaagggagaagatttttcctcagtgactcctaaactccttgtagct
gtgtggggtgtctTTGGAGACTGGCTACAGCCT
Primer
(+)cccttgtcctgatccagtgt
(+)aggctgtagccagtctccaa


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