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Mouse element [ mm1000 ]


Position: chr1:168,416,030-168,418,436 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gm4846(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCAAGGGAGGGGGGGGGTGTCAGTGTTCTCtcagaaaaaattaggtttttgagttgttt
tttccacttaaatttctacttgaaactcatgactattaaacattcatgttaatatggctt
tttgatcagtacataatatttgcatatatttgtgaaatacagtatgaggctttgattcat
gtatatatggggtaataatgagctcagaataattaacatatgcattaccttaaacctttt
cattcctttaaaaaagattttaattaacttacaaagtagtaggtttctctatggcagggc
agcagagaaaaaacagagttgggctcatggtgccagtgatggtggggcaggcataaatct
ggcagcatgccagttagatccataaggggaattggagagacagctcagtagttaagaaac
acttctctttcagaagacccaggttcagtttccagcatccacagtaggccacgtgtagta
tttatttataattctaaaaacacactcctttgggctctgtcagtacctgtatgtacctgg
cacacacacacacacacacacacactcaggaacatacatatataataaaagaaaacaaaa
ttaaaattagaaagccacaaagttgtctgccactgtgaataagtttcccctgtgagagat
gcattgctcacagtatggacagccaagattttccttaggttaagagagtactccaatgaa
agataaattataaaccttgtcccacacttctcttttatgataaaacagagctactagaca
ctctaaaaatagagccccaagttagctgagggattttattttttaactctgaggatcaac
cagaagtagaatcatgaacattccaggtaaattttttaccaatgagctacacctctgcct
tagcagaataggtaacattagaagagaaaactaggtgcctttatcatctgcatgcgtggt
cagagaacagttgctcctataaagaccatcatacctgcgaacacgcgtgtaacccatcgg
ctttggagctctgatgtgggaattgtggctcctattggctggaggatcccaatgaaggct
agtgttggcttctctaactgaggagggaagacaaacttaaacattgtgtgtttgctgtcc
aggatttcagagctgtcatccaagaaagggaaagataaagtgtagcctgtggcaaagaca
acaacgtctacaatctcctccgagccatcctcaaagatggcggacgtggaggtgaactcc
ctcacgttggtcttcaccagcactcttccggaaatgatgcgatttggcaggtcatcactg
aagatagactgatggctgagaaatctgcatgatagggagcataattatatggaacgagaa
tgaacattttcataaagaagctgaggtcattagtgcttagaaaaccatagcagtattgct
ctaattttaatagagtttactacctccctgggcacgtgatggggtttattagtgaagaat
gtgattttggagtcagaatgggctttatacttattctactttatttttcctcactgtgaa
tttctggacagctcatgaaacagtttattatcaatttccaaacttgtaagatgataataa
tgacataagaatcaaataagacctcaccaatcaagtcatgattacactgtattttaatga
tggactttttgccaggagtaaaggtcttcattgttgatttaggcacttgtgcttgggatt
atgtaaagactgacgcaaattggttatcagtctctttcaaggctctacaatatgcaactg
catgactgtaatactgaatcttccctggtaaatatttgtgcttagtgacacactaatgct
tggtaattataaggtctgagtttcttacagaaagccccattctcaggtgtgcttcacagt
tgatacattcatgtatcatgttatgtattctatgctcttcaccaggattatagacccagt
atcataaaactagccatgaaaatctctgcttttctattacagacatctctatgctaattt
tctggtttttaccaacccataatagtttaagcctttgttatcttttatattatttaacca
attggaaagtcatttcattttatgtatatggttgttttgcctgaatatatatctgatcac
cacatgtgtttttgttatccttagtggccagaagaagttgtcagatcgtatacattcact
gactggaatggcgttgttggttttttgtatgatagtttgttttaaagtgtgtgtgtgtgt
gtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagggtgcaatgtcct
ttcaggccacaagagagcatcagatcccctgAACCTGGAAATGGAGATACTGGAGGGTTA
TAAGTCA
Primer
(+)AGCAAGGGAGGGGGGGGGTGTCAGTGTTCTC
(+)TGACTTATAACCCTCCAGTATCTCCATTTCCAGGTT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.