Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm711 ]


Position: chr1:54,961,825-54,965,420 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Ankrd44(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CtCCCATTCCTGAAGCTTCCACTGtaaatacactgaattttatatgaatctgataaccct
aaatgagagagtgcattttattctattcaaagttccaagttttttactagctctggaaat
cctagcttttacaggaatgttgctcacagataacaaatcacctctacaaaaaaacccgca
tgagtctacactgaaagtccacatagtctagggattagaaagataaggcttatttagtac
cctccctttgtggtggttaagatcaaacccaggacctcacgagtgtgaatggtgagcctt
cccactgagccatacttcaaccccggcctcttatttctaaagttatataaaaagttttga
tgggtatttctcagattcgattaatttattataagactaaaaatatgatcatctcatgtc
ttcaatgtggctatatgcactgatgtactattttcctataaatccttttcatatttcttt
tattagcattagatttgttttgctgtgcgtgtgtgtgcacacgcatgaacgcacgcaggt
ccacatggaggttaagttgatgttaggtatctccccaaacacttgcacttgattttggag
acacccccagcactgggagggtttttacacaggtagcactagccttgtcaagagtacaca
ttcagggttataacctgaaatcaccagtaatgagggttttttttttttcacatatggctg
ggaagactcgaggacaggtgtaagtattctgctctcaccaaatagataaggagccatgaa
tcacaggggcagtgccttagtggagcttgcagcaaaacatgaagtggctcagcacccgga
tgttcctggcttccactaaccaaacaacagctcaaagcagcttgtacttgaccagttcct
acttaatcaacagactcccgggcagcctaacagcaagtgactgcagcaatgagcccggga
ctggtgggaagggggccgggcagagccgggcagaaacaaggctggaagcaaagcagcggc
tggtgctaaggggctaggtgcactaaggtgtaaagcactaagactccgagagccagtaga
gaaatacaaaaataatcagtggtgagtggcaatgatgataaaacacaccaattctgcacc
atgctctgtctgcattcagaatgggcacccagatagatccgaacttatttcctatctcta
taaagggaagaggggctctcctcacactcaggccacagccatggtctcagttttaattgc
cctgaggacccctctacccatcttctcttccctgagcggatatgtaggtcaccaaccagc
aagtggatcaaatctcctaggtagagaccttcgaccttgggaacgtttagagcagataca
ggtgctgcaagatggagcggacattgaagaacgccaccgatgctaaggaaagagcccctg
cccacatgcagttctcatgtgcattttgtgcagtcagcaattctgttttctccacagcct
tcaaaatgtcagcttctcatgtcaagcagtatgagtacgtcaggcgaagcggaggctttc
ttatggtttcaggctggtagtatttcagaaccacatgattgcagggctgagctcagcagg
gctgtactggagagcagattgcatatccctcatgctgcccacatttcagagactgataaa
atattgtccctggggattataagaggaagaaaaaaaaatgacagcacatccccctctaag
gaacaagcccgtgggtgatcgtactaaatgccagggaacccactggagcaccaaaatggt
cagatggaattggaagaaagcctaagaggccattcattctctacgtccagtgagactctg
agtcctaaaacacactgtgcacatacgcacacaaacacacacatacctgaagtctcctcg
gcttctcaatcacaacgcaaaccccaagtcccttagtgggtttcaggggcctccattaac
tggccaccaagcaagtaattgccaggtgagaaaaatcaacttgggccccagaaggccaag
tgcagtgtacactcgggaaacaggcaaaggagacagattagtatgggagaaatcagatac
tcactcctccctgtccaccaataatccataccaaaaggggttcgggtacaacaagggcaa
atgcagctgagatgtggaaagcgcgcatctaacaaaagcacaaagggttcgttaaaaagc
cgtctccctccctccccccagccaccaaatgctctgcaagaaaagccacagcccagcccg
tgcttgctcgctcgctcgctcggcacatctggtttcagttacctgtgcccaaactgcagc
tctcagagaaacagagctcgagctgactccatggtttaagatctgtcagaacagcttata
tggagatggagggacagagtgtggaagccttgagcaacaatatttctggtcatcacgtga
cccctcacagatgacattttggagtcagatggcactgctaaacttggtcactggaaaagt
aaaagccacctagggagaccatgatcacttcatagataaacccagttacccactcgggtc
aaccactagtcagcatgaacatctcacaaattcatgccacttcacgagatggccacatgc
tttccctgccacggtgcaccatagcccctcagaccacactcaaacatgttaaaagtcaga
aaccctcccatgccagactccaaatcctactcttgccagatagaccaaaaagctgtcaca
cctgacacggctcccagactttcctctgtctattcactgttcctaaaacagttgcacata
gaaatgtggtatctttttaaagttactttagtgccaagtgtggtggtgcacactcacaat
cacaatgaaagcagagatcatgacttcaagatgactgtgagctgcacagcacacccagat
caaactgaacccacaagacaataatctacctagtaatctcagtgacttcgttacattaat
taattacgctctgtaaaaagctaccctttgccgggtgtggtggcgcacgcctttaatccc
agaactgcactcgagaggcagaggcaggcggatttctgatgttggagcccacagctgact
ctggctgtgtccaacaaaatgtgacaaatcattgacctgagcgctttttctttagccaca
actcattcattgccccatccttttaatatttgggtttctggttcaacagaagccatgaaa
atacttcatagtatggtaatattatacaattgcatattgtctattttattctaaacactg
gtgaataatggtcagtaaataatttcctaactcctagatcatgaaatttattctaaatag
gaatatcttactttttatgctctatgagtacttaacccaatatttaagatatgcattgat
atgttgttaataatcattacaaacataatactaaaatttatcacaatcattttacatgca
tcacaacatgaataagagcaggtacttggaggatttgaaggaaggaaaaggaagaggaac
atgatgcaattataatctaatttttaaaattattttACAAAAATGCATCCCATCCA
Primer
(+)caccCATTCCTGAAGCTTCCACTG
(+)TGGATGGGATGCATTTTTGT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.