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Human element [ hs552 ]


Position: chr18:75,544,627-75,545,680 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: GALR1 - LINC01029

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATTTGAACACTGGAGCTCCTTAtgcgctcaggtgcggtgccgccagcctgcctcgggccg
gcagcctgctgtcggtaggtggctgtcaccgggtctgattaatgaccccactgaaacatg
tccagccacattagagctccatgtatctaccacagtccacatggaccaagctttgttctg
agaggaaatggtgtcagccgccactggcgtttacccataaaaagataaagatttactgtc
atcataggcgagattaaagtgcacaatgctgacattgatttttaccaaaaattcacattt
tgggaaaactcattccagggacgactgagatatgatcagcttatttggagagggataata
tggaatcttctctcgaatgaactttgaaagaagtaaattgtaaatattgatttctgaaat
gaactgtcaatctcagttggtaagattattcctatcatcttgttgcgacgatgaattcaa
aactgctgacaaagtggagtgtataggatttctgttaagagcagtcaaggggctttactc
agcagagcctagtaacagttgttcaattttatcagataacagctgagatctcatcaggag
tgaaaaatgaaatgaactgtgactctgaatcaggatctcgactcttatcccagacaaaaa
tcatcaaacagcagccaagggttttatattatttcgggccacttcattactggctagcac
aggagttgaattgctgtgagcagggctgcctttcccgtctcaccccagggtcaagtctga
ggggcggcttgataggctcccaacatgttaaggggttatcctattaccacttaagaggta
tattgaaagatagcaaatctcgaccacttgctatcctgctcggattttttttttattgta
catgggttatccattattacttgttgtagaataaatataattcatcttttccagtaaatg
ttagaattggacgtatctaattcatccgttcctcctatcaaaaaaggacaatgaaggttt
attgaagggagcCCATAGTTACACGCGAATGGTT
Primer
(+)ATTTGAACACTGGAGCTCCTTA
(+)AACCATTCGCGTGTAACTATGG


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.