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Mouse element [ mm2082 ]


Position: chr13:15,212,904-15,218,148 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCTATACCACTCCCAGGCAtaaagccaaaagatgcttcaacatataacaaggacacatg
ctccactacgttcacagcttatttataatgcttatttataatgagcagaagctggaaaca
acccaaatgtccctcaacagaggaatggatacagaaaatgtggtatatttacacaataga
ctattactcagctcttaaaatcaatgacttcatgaaattcacaggcagatggatgaaagt
agaaaatatcatcctgagtgaggtaaaccattcacaaaagaacaaacatggtatgcactc
actgtaagtggataatagctcaaatgctcagaatacccaagatacaattcacagaccaca
ttaagctcaagaagaaggaagaccaaagtatagatgtttcagtccttcttagaagaggga
actaaatactcacaagaggaaattcagagacaaaatgtggagcagagactgaagaaaagg
ccattcagagactgccccacttggggatccatcccatacatagtcaccaaacccagccac
tactgtagatgtcaagaagtactcgctggcaggagtttgttatagttgtctcctgagagg
ctctaccagagcctgacaaatacagaggtgggtgctctaagcaaaccattggacttagca
caggttccccaatggaggagacagagaaaggacagaaggagctaaaggggtttgcaacct
cataggaagaacaactgtgtcaaccaaccagacttctcagagctcccagggactaaacca
tcaaccaaagagtacacatggagatattcatggctctagccacatatgtagcagatgatg
gtctagttgggcatcaatgggaagataggctcttgattctgtgaaggctccatgccccag
tgtaagggaatgccagggcggggaggtgggcatgcatgggtggatagggcaccaccctca
tagaagcagtgggaggagagatgggatagggggcttgcaacgaggaaaccaggaaagggg
ataacatttgaaatgtaaataaaggagtatccaataaaaggaaagaaaaagaagaaccat
tctaccaaatgccattgaaatacatatatgtagtatggtacatttataaaatgttatctc
acaaagttagaaagtataaaagaaataaatagattaatttctatatgcatagtacatagc
aaaattaaacctgtctgaggtaaacgaccaaatggatctacaagtggtaaaatagaagct
acaatatatatttctaatctcttaaaaatcccaattccaagaatattcatggatgaatgc
taccacacctaaaaataactaatatacttttcaatctatttcaccaaattaaaaaagtaa
catttctatgaagtcactattatcctaataccccaaaaaattattggtgaatttgcttga
tgcacagaggcacaaaaattctcaataaattacttgcaaaccaaatttagaaacacatca
aagagggaaatcatgcctggtaccagaaatctacccagggcaagtgaaatcatggacctt
gaagaataatgtagactagtcactttgctaagccagcatatttgtccttacactcatagg
caactgtagtcctcatcattgatcaaggaaacatctctttgcaatagatggagaccctta
cagaaaactatagtcaatcaatatctagaggtgcggattccagttccaactgaaacatct
acaatccactgaaggctcagtggtcattacagaagaaggggtggaaagtttgcaagggcc
agggaaccagagtgctatgagattgggtctcctgaggatgtcagagcgatgctcaagaag
cttcaccagcatgactgcaaggaaatgagaaatgtcactgtgatatcttgcttttgtgat
gcagctgcatgatgtctgttttacctgaatttgagatgtgtgcatgtgtgtagatgtgtt
tggatgagccttgctcaaagatattgtttaataaaggaatacaagctgcccctgcaagct
gatgctgagacttctagggaggcctgatttggtctcctttgtcttgagattgctctctta
ctgagacctgcctatgagtttaatcttcccagcacagagccctgtagactcaagacttta
aaggacaggctcatactctagcggaactcatatctatcatatctatactgaacttgaatc
ctttatgttaataacaaaacaccatacttcttcagagaaaacaaaatatgctaaaggaaa
ataaatatcttctataactaaaactacaactacaggattaacatgtaaagaatcttgatt
ctctcctgctttttctttttaaaatttttgttaatctttatttgtccatataggtgtttt
gactgaaagtatgtctgtgtgcatgtgtgcctagtggttacagaggccagtagaaagctt
tgaatctatgagactgaagttacagatagttgtgagccaccatgggtcctctgaaagagc
aaccagaactcttaactcctgaacttgtttctaaagagtgttagccttgtaaagggtaag
acttacaaaagaagatggggggatgatttaacaatatgtgtatacataatatttttttcc
aatcctgtgtttattctctgaactttagtaataattatggattcatattgagcagctcat
catatactgggtagaaaacaatactttagagtgtagaagatttgaacttagaaattaatt
tgaagttaatcatgttttaaatcttttaaaaatattttaataaaaatataattgcacaac
attccctcttgcatttttctcccttccaagctacctccctctaggttctcccatgttctc
tgtgacttaaagttaaagtcacagaaggtctgaatgagatgtgcaaggtttatagaaaat
gagaatcaagaatgaaatatatttgatttttagaattcctaagtttatattgatctcatg
gtaacactgacaagagcttgcttaaaagaacatgaagtgtatgtctaccttaaagaaaaa
attgtgtctttttaattttgttagactttaaccattagggaaactgagttataacaaaac
tacagtttatttaaactggtttttttttcaatctaaattttatctaaatgttacacaaag
ctaatatacaagacaagcaaagttttccttccaggtcctcaaccaatgtttgtggtccct
tgaccatgaggataagaggatcaaaaataggcagccagcattctgagtcttgcccctgaa
ggccaatcaggacccagagcataatcacacttctttgataaatcacctgtcccttgatca
cagatatcacacagtctctagagatttgactctaagccatgtacatcttctaagaagggg
catcattggggatcctaaattgcatagattacattatgaaaagttataactatatgggag
tctaccttgttaaacagatgtatgggatagatgacctgcaaacagataagaatagatgac
agaaaagaaccccagattcaaggctaagacccctccagagtatacaagtgggcataaatg
tctattaaaatatataaaatatttactcattattacagaccacatcctgaggttaatagg
gactttcccattccagcttctactgatcataatgccataccatgacttggccttgtagaa
aacatagatttagacaacagtagccttgtaacctctacggtattgtagggagttataaaa
agtttaaacattacttgggactatgatatttcatggccccctttccgcaacatctgagaa
agtcaaaaagttaaatcaaactcaagataacaaaaataagcttctttttgagcacctagc
cctgcataggcttgatgtgctatggtcagggtatgcccagagggtcctccactctctcaa
ggaaaatgggagggaacatgagggaggaactgtggaaagggggggggacttgtggggggg
gacagctatttggatataaagcaaataaatatgtttttaaaagtcaatgcaaaggtcaaa
aaaaagagagagagagaacgaaataagcttcttttaaaatagattcttcaccactaacca
ccttagaatttacaatcctgtcccccccccccaaaaaaagcagtgggtctgtttccttgt
gaaatttttgtgtcattcccccttttagtgttgctacagatttcctgaccaggaaaacca
aagactaattttttgaaacatgtatactgcctatcccttccattttatcatctctcaagt
caaagggactttttgtttaagtgccacagttgaagcttgcagtttgtcagtgttatcctg
agaaggtggtgttgataaaatgaaagaaaacatgaagcaaagagaaactgcagtctttca
aaacacaggaaactcaaaaagaaggaaggccaaagtgtggctacttcagtccttcttaga
agggggaacaaaatactcatagaagcagttacaaagtgtgaatcagagactgaatgaagg
accatccagaaactgccccacctggggatccatcccataaacaaccaccaaaaccagaca
ctactgtggatgccaacaagagtttgctgacaggaaactgatatagctgtctcctgagag
gctctaccagtgcctgtctaatacagaagtggatgctcacagccaatcattagacgaagc
acaaggtccccaatgaaggagctagagaaagtacctaaggaactcagtgggtttgcagca
ccttaggaggaacaacaatctgaactaaccagtaaccccagagctccctgagactaaacc
accaaagaaaacacacggtggtagaacctcttagagtggatgctcacagactgagcacag
ggtccccagtgaaggacccaaggagctgaaggggtctgcagccccataggaggaacaaca
atatgaaataaccagtatctccagagctccctgggactaatccaccaaccaaagaagaca
taaggtgggactcatggttctagctgcatatgtaacagaggatagcctatcagtaatcaa
tgggaggagagacccttggtcctgtgaaggctctatgccccagtataggaaattgccagg
gccaggaaatgagagtgtgtgggttggtgagcatggggaggggggaagggatagggtgtt
ttcagAGGGGAAACTAGGAAAGTGG
Primer
(+)AGCTATACCACTCCCAGGCA
(+)CCACTTTCCTAGTTTCCCCT


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