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Mouse element [ mm2040 ]


Position: chr13:15,002,952-15,007,969 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGAAGATTGAAGTTGAGAGcatttcagatgtaacataggcaattgctggggtacagctt
tgacataagtcagggttgtgaaggtctagggatacctcttaggcaaatgagaaaacacaa
aattgagatacaatactgacaggcagttcttgcagtgggagttcctgaactcaagagtca
gagtgctctacagacttgactcaaccccagttttttattgaaatcacacaaggaagttgg
gttacaaagttcatagggggtgggataggtaaatgcttctctattttcctgtgccaacat
tttcttgtgattcagattagtacagatttagaacagaagaaagggaactatacaatctca
aacataccagttttatagcaagcatgatttttttttttatctcctgaacaccaggctcca
ctgaggtcaagagcagcagtactgcagttacaaagtcattatctttcagccatatgcaag
ataaaaggaaaaacatgatgtcatactgctaaccctgcagtcattctaattcttcctggg
cccaacctatacaccatcattttaattctcctggctgttctaattttctacattttaatt
ctccttgtagatacttaattctcttttatttggaaatttagtcccatggcaatgtgctcc
aaggtgatcttaaaaatatggcaaagggcactttccttggctaatttctttttctagtac
tgggtcccataccctaattccacaagatctccaatctgggtcaaacatccaggaccctat
ctgtctgtttacaaaaatatcctcatttgacctgtttggagaattcctagggagctgcca
ccattgtccctggatccaagaaacccattgctgactttctggggaatatctgtatcatat
tccatcatcagttttataataaaattatcctgtttttattatacagaactgagactaaga
ctgagggaacagctgcagatttactcatttctgcctgtgcatgtcaaactttccccagat
tttgtagctatcatcatatgtaattttacattaggtacaatttccccaaattcatagagc
ttccattacaggtacatttctcttggattcatggacaactttcactttaatatcatcggt
aacatctagttcctggatatcaagtgggttcttcctactgggtcttgacaggtcaccaaa
tactgattttatcaaggaaggaggaaagacaaggagcagtaaatggataagaagaatgat
aagtactatgaatagctgcagaaatgacatcatgaggtgcttgtgccaaagaagtaggcc
taggggcctctcagtactcacactggggccaacaagaggcaatagcctcattctccgaaa
aacagtacccccagcagtgttgtcttccttgtcatcaggggtcccaggcatcttgagatt
aatgtgaggggcttctaacagcaaattataacttggggttttgattctaatagcatagag
ggtagatttctgctcagctctagtgctgatttaaggcttattataaatataaagttgtgt
ggtttttatccaggaactggttgatcaaaggcagcaagcatagaagcccccaactgagat
taaatattatctacaacaaggaggcctcacttggaatttcctcactagggtaatgtcata
ggagtttccactgcactatcagtattccattcaggaatttgtcttctatgccaatgggtt
caatgctgcttcctaatttttcttatatcaagttcagtatgtctagttttatttgcagat
ctttgatccatttggatttgagttttgtgcaagatgataaacagatctatttgcattgtc
tacatgcagatatctagttagaccagcatcattcgttgaagatgctttttccccattgta
tatttcttacatttttataaaaaaaatcagggatccataggtgtgtggattcatgtatgt
atctttgatttgattccattgatcaatctgcttgtttttatgctaatactatgtagtttt
tattactatagctttgtattatggcttaaaatcagagatggtgtcacctctagatgtcct
tttattgtttaggattgttcttgatactgtgggttttatgttttgccatgtaaagttgaa
tattgtcctttcaaggtctgtgaaaaattgtgttggtgttttgatgggaattgcattgaa
tctgtagattgctcttggtagaatggccacatttactattattaatcctattgattcatg
agcatgggagaaccttccatcttctgatatcttcttcagttcgttctacaaagacttgaa
gtttttgtcatacaattctttcatttgcttagttagagttacacaaagatattgtatatt
atttgtggctattataaaggttattgtttccttattttcattcttcgttcatttgtcatt
gtatataggaggaatactatttttcttgatcttatatccagtcactttgctgaaggtgct
tgtcagctgtaggagtttcctggtagaatttttgaggtgattcatatatgctatcatatc
atctctaaataatgataatttgaattcttcttttctaattcgtatcctgttaatcacttt
cagttgtcttatttgtctatctagaaacttaagtttctattaaggagatatggagagagt
gggcagccttgtcttattcctgatttgtcatgatttttttatttctgtttgcccaatgtt
ttaaaagtgagtttgctcttgtttccaatgccttatgtgtattaatttgtgcccaatttg
ttaattataggttctttaacactgcaaagtttcctcttaggattgcttttattgtattcc
atacattttttatgttgtgtttcatttacattcaattgcaggatttttttccaataatta
atattttattcacaacatcctgatcataggccccctccatcttctcttcccaggaccacc
cttattaatatcttctcccactgacccctcaccttcttctcagagaaggggagtctacgt
tgggtaccaccccaccatgggacagccccagcaggactaggcacatcctctgccattgag
gcccaaccaggcagtccaggtacagggaagaggatccaatggcagggaaaagaaaccaat
acacccaactccacttgttaggggacacacatgaagactaagctgtatgtttgctacaaa
tgattagaggactaggtccagttcctgaatgctctatggttggtgttttccacaatctgt
tggtgagactttccactgagctttctctttgcctatttagcatattatttgcagcacatt
tcagatttgctcatctaaatatatttttatttaatatattttaaagatatttctttattt
ttccatttatgagactgaatgagtttctgtttattgtgtgcctgcaggagactccagagg
ctgtaagagggtgtcagatcctacagagctggagttataggtgactgtgatctgtcatgt
gtgtgctggaatctaagctggagttctctgcaagcacagtaagtgaacttaaataatgat
ccctctcaccagctccttgatttttatttttataatttgagtggcctggcagtggtggcg
catgcctgtaatcccagcacctgggaggcagaggcaggtggatttctgagtttgaggcca
gcctggtctacagagtgagttccaggacagccaggactgcacagagaaatcctgcctcga
aaaaccaaaaccaaaaccaaaaccaaaaccaaaaaaaaaaaaaaaagttgcctttattat
ttctttcagctcttttgttattgttctcttccattattttcatacatttttttccttagt
tacttgagcataaatacaattattttttggaattatttgtctgaatctgaaagttattct
aaataattctaattgcaagtcattatgaaaagatggcaaatttgagtaaaaatagttttt
tgtgttgtctttgtttctatactgagacatgcatgtacatataaagttagtttgttggct
gaatttttctttctttctttctttctttctttctttctttctttctttctctctttctct
ctctctctctctctctctctctctctctctctctctctctctccctccctccctccctcc
ctccctccctccctccccctccctccctccctccctccctccctcccttccttccttcct
tccttcctctctttcttcctgatctttgttctttcagtggaggtatttaaaaggttcagg
agaagactaagttgtagtaggcttgaggtataactttcctctgtgggactggtattcaag
gacacatattgtacccctagtcttcctcggagaatcagcaattgttctgggttagcttaa
gcctttggtttgtgtctctagcttttatcatgggttgaggaattccccataactgtatgt
tttacccaggatcttggtttaggcatgttatttccattagatgaactaaactattgaggc
atggattagtctacatacttttaaccactttcctgaacactcagcaaaatgtttagcacc
aaaaaaagggtaatcagtatatatagaccaaacacatggacagatgatgaaaaatatcag
agcccaaattggcttgcctttgcttcaaatgatcagttttttaggaaaagaagccatgtg
cacatttgattatttttcttttaaattcttttttttattgaaatcttaatttaatgaatt
tataattcacaatccccttgaagtgagtacctggttatgttagttagcagtgggcaggtt
aagagtagaaccttcattctcttggataaattttttcaagtttatactggtcacaaatgc
ttttcccccaaactattccagtcatccctaccttagatccctgttactataatgtcatcc
tttatagtttttgaaaacACAAATGTCACGTTCCTTTG
Primer
(+)TGGAAGATTGAAGTTGAGAG
(+)CAAAGGAACGTGACATTTGT


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