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Mouse element [ mm2005 ]


Position: chr7:122,516,448-122,519,229 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: A730082K24Rik - Sox6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGAGACAGAGAGCAGACAGGaagtaggactggacaatgaaccctccaggccctcctggtg
acccactccctcaagcagggctccatctacttcctaaggctccacactgtctaccatcaa
agaagtttatatccaaaacacagcaggtagcaatgttcacaccagctgaggagtccctgc
tgccagactcttagttaacctggcttgaatgagatgaatcctacccccatctagccatag
gagaaacacatagtctccagctcagccaatgagagggcttcactcctgtgtccgggtgac
tgattgagggcaagatgtatgcttcgaggtgacccaagaagcctcacaaataagctttct
ctgaaaggctacagaagagaaactctttctactggccttgctgggctgctggggtcaagg
gctattcatgcgagtgggactgaattaccctgagaaggaggcaccacaaacaaatgtcac
tctgggagataaaaggagacaaattctcagcctcatatggagtccttgctccagctgcac
cttcaggtgacacatcctggatgttggttgccttcactcttcagtgtagaggccaatgat
tgattttgtaaatatgtgtgtctcctcggcacttgacctaggggagaaatattctcattg
atttcatacttaaaccagattgacttaaacacctgtcactcacgtgtttaagaatccagc
cccatgtttcagataaatagtggatatcagccactgctgacaagactgtggctgtggcca
tgagggagggtgaccaaaggacccttacctaccagaatgaggtaacgatgaaaaccagag
aggagttgaagagtaccaggcttggtcaatgaaaatgcagttattgtatctggagagaca
gtttcctgccaatgggagagaacctgagcaaagctgcctcctgctggagggccataagaa
ccgtgggggcagtcagcagggagtggggctggatgggtgacttcagctctttcctggcct
ggtactgcgtatttgaatctcctgctgggccaagtagtgactttgcaggccctgcggaat
tctcatcatttcccagggacctttcagcttgggtttggctcctatgccaaggctgtgaca
gctttattagcacctataattcaatgtgagcatcaatgtgttgggaaacactttggggct
atctgttaaagtcagtttaattccctctcaaatgcctctttgtttgccaaagtgccaggc
agaagccttccaggtaggcggggagatgagccccagacagggatcagcgggacgtgtctg
ctgagagcacaagtcactttgctgggggctgatgtcatttccagttagtgggctcctggc
agaaaggtctgcagaggctcagatgacatcactggagagcagcctgtcattggcggagat
aacaaatggagctcagccccaagttcctgctgccccaggaagtctcaattcattccttgg
cttcgctccctaagaggggtctggaaaggagactctttggaccctagcagactgtcttgc
tggctacttcatggaaacaaaacagaggggtatctaaactttcctcaaagttcccagtga
ctgttgttatcacgtgctgccatgacacagcagcacacacagccgatcatctacccagtg
tacatgttcccttctgctgttctagaatctgccacagccactaaggcatgtcattcttca
aaagattggatctccccttggcagatcctcactaactcatccatccatccatccatccat
tcattcattcaacaagttctatagaatgcatatttttgtgatcattgtttcagacactaa
ggatacttcttgactgccccatctggggatctatcccgtatacagtcaccaaacccagac
actattgtggatgccaagaagtgcttgctgacaggagcctgatatagctgtctcctgaga
ggctctgctagtgcctgaaaaatacagagacggatgcttgcagccaaccattggactgag
cacagggtccccaatggaggagttagagaaaagactgagggagctgaaggggtttgcaac
cccataggaagagcaataatatcaaccaaccagataccccagggactaaactaccaacca
aagagtacactactcatggagcaaaccatgactccagctgcatatgtagcagaggatggc
cttgtcggacatcaatgggaggagaggtccttggtcctgtgaagaaggctcaatgcccca
gtgtaggggagtgccaggtggggggaggtgggagtgggtggggaggtagtggagcatcct
catagaagaagggggaggggtgggggaggaggtttccagagggaaaactgggaaaggaaa
taacatttgaaatgtaaataatgtaaataaaggaaatatccaataaaagaagtgaaaaaa
aaaaaagaaaggaaaaagaaaactcaagcctttgcctctgtgagtcttaattctagttga
gatgacagagaactaaatatattatagaataaagatgtgatgtcagggcaaagcagtcta
aatacgtattgagaaacaggctgtctgttttagataagacagcaattggggagatggtgt
gtgagtcttgggaagagtcttcatttccaatgaggaatctgggttggatgagtgagcaga
tgaatgaatgaatccaaaggctctgatgctcactcaagtcttttaggtatattagaatca
tcAGGATCGACAGTCATGGCTT
Primer
(+)GGAGACAGAGAGCAGACAGG
(+)AAGCCATGACTGTCGATCCT


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